Atomistry » Sodium » PDB 6h6r-6hj3 » 6hdm
Atomistry »
  Sodium »
    PDB 6h6r-6hj3 »
      6hdm »

Sodium in PDB 6hdm: R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Magnesium Trifluoride and Beta-G6P to 1.3 A.

Enzymatic activity of R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Magnesium Trifluoride and Beta-G6P to 1.3 A.

All present enzymatic activity of R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Magnesium Trifluoride and Beta-G6P to 1.3 A.:
5.4.2.6;

Protein crystallography data

The structure of R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Magnesium Trifluoride and Beta-G6P to 1.3 A., PDB code: 6hdm was solved by A.J.Robertson, C.Bisson, J.P.Waltho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.27 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.300, 54.340, 104.620, 90.00, 90.00, 90.00
R / Rfree (%) 12.6 / 14.8

Other elements in 6hdm:

The structure of R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Magnesium Trifluoride and Beta-G6P to 1.3 A. also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Magnesium (Mg) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Magnesium Trifluoride and Beta-G6P to 1.3 A. (pdb code 6hdm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Magnesium Trifluoride and Beta-G6P to 1.3 A., PDB code: 6hdm:

Sodium binding site 1 out of 1 in 6hdm

Go back to Sodium Binding Sites List in 6hdm
Sodium binding site 1 out of 1 in the R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Magnesium Trifluoride and Beta-G6P to 1.3 A.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of R49A Variant of Beta-Phosphoglucomutase From Lactococcus Lactis Complexed with Magnesium Trifluoride and Beta-G6P to 1.3 A. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:14.4
occ:1.00
 O A:GLU124 2.3 9.7 1.0
O A:HOH555 2.4 35.6 1.0
OD1 A:ASN127 2.4 12.4 1.0
O A:HOH576 2.4 18.4 1.0
O A:HOH461 2.4 15.9 1.0
O A:HOH556 2.5 20.6 1.0
C A:GLU124 3.4 8.7 1.0
CG A:ASN127 3.6 11.7 1.0
O A:HOH554 4.0 26.0 1.0
O A:ARG125 4.1 8.7 1.0
C A:ARG125 4.2 7.4 1.0
CA A:ARG125 4.2 8.6 1.0
N A:ARG125 4.2 8.3 1.0
N A:ASN127 4.2 8.1 1.0
CA A:GLU124 4.3 9.2 1.0
ND2 A:ASN127 4.4 16.6 1.0
CA A:ASN127 4.4 8.7 1.0
O A:HOH559 4.5 23.1 1.0
CB A:ASN127 4.6 10.0 1.0
NH1 A:ARG125 4.7 13.3 1.0
CB A:GLU124 4.8 12.1 1.0
N A:MET126 4.9 7.3 1.0

Reference:

A.J.Robertson, C.Bisson, J.P.Waltho. Transition State of Phospho-Enzyme Hydrolysis in Beta-Phosphoglucomutase. To Be Published.
Page generated: Tue Oct 8 09:18:15 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy