Sodium in PDB 6hct: Crystal Structure of Archeoglobus Fulgidus L7AE Bound to Its Cognate Utr K-Turn

The structure of Crystal Structure of Archeoglobus Fulgidus L7AE Bound to Its Cognate Utr K-Turn, PDB code: 6hct was solved by L.Huang, D.M.J.Lilley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	71.07 / 3.09
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	142.140, 142.140, 166.798, 90.00, 90.00, 90.00
R / Rfree (%)	18.7 / 23.7

The binding sites of Sodium atom in the Crystal Structure of Archeoglobus Fulgidus L7AE Bound to Its Cognate Utr K-Turn (pdb code 6hct). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Crystal Structure of Archeoglobus Fulgidus L7AE Bound to Its Cognate Utr K-Turn, PDB code: 6hct:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Crystal Structure of Archeoglobus Fulgidus L7AE Bound to Its Cognate Utr K-Turn


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Archeoglobus Fulgidus L7AE Bound to Its Cognate Utr K-Turn within 5.0Å range: probe atom residue distance (Å) B Occ A:Na101 b:91.5 occ:1.00 N6 A:A13 3.6 0.9 1.0 N4 A:C12 3.9 89.1 1.0 O4 A:U14 4.3 0.7 1.0 O4 B:U10 4.7 98.0 1.0 C4 A:C12 4.9 75.2 1.0 C6 A:A13 4.9 92.4 1.0

Sodium binding site 2 out of 4 in the Crystal Structure of Archeoglobus Fulgidus L7AE Bound to Its Cognate Utr K-Turn


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Archeoglobus Fulgidus L7AE Bound to Its Cognate Utr K-Turn within 5.0Å range: probe atom residue distance (Å) B Occ B:Na101 b:64.5 occ:1.00 N4 B:C12 3.5 84.1 1.0 N6 B:A13 4.1 81.7 1.0 C4 B:C12 4.4 74.3 1.0 C5 B:C12 4.5 79.5 1.0 OP2 A:A8 4.9 0.7 1.0 O4 A:U10 4.9 84.9 1.0

Sodium binding site 3 out of 4 in the Crystal Structure of Archeoglobus Fulgidus L7AE Bound to Its Cognate Utr K-Turn


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Archeoglobus Fulgidus L7AE Bound to Its Cognate Utr K-Turn within 5.0Å range: probe atom residue distance (Å) B Occ D:Na201 b:0.2 occ:1.00 NH2 D:ARG84 2.8 0.7 1.0 ND2 D:ASN80 3.4 0.9 1.0 CG D:ASN80 4.1 0.1 1.0 CZ D:ARG84 4.2 1.0 1.0 CB D:ASN80 4.2 0.3 1.0 NH1 D:ARG84 4.8 0.5 1.0

Sodium binding site 4 out of 4 in the Crystal Structure of Archeoglobus Fulgidus L7AE Bound to Its Cognate Utr K-Turn


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of Archeoglobus Fulgidus L7AE Bound to Its Cognate Utr K-Turn within 5.0Å range: probe atom residue distance (Å) B Occ D:Na202 b:0.9 occ:1.00 ND2 D:ASN70 3.4 0.1 1.0 CG D:ASN70 4.2 0.6 1.0 CB D:ASN70 4.2 0.1 1.0

L.Huang, S.Ashraf, D.M.J.Lilley. The Role of Rna Structure in Translational Regulation By L7AE Protein in Archaea. Rna V. 25 60 2019.
ISSN: ESSN 1469-9001
PubMed: 30327333
DOI: 10.1261/RNA.068510.118