Sodium in PDB 6h9u: Crystal Structure of the Bip Nbd and Manf Sap Complex

All present enzymatic activity of Crystal Structure of the Bip Nbd and Manf Sap Complex:
3.6.4.10;

The structure of Crystal Structure of the Bip Nbd and Manf Sap Complex, PDB code: 6h9u was solved by Y.Yan, D.Ron, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.47 / 1.57
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	153.310, 66.750, 44.300, 90.00, 106.54, 90.00
R / Rfree (%)	18.4 / 20.4

The binding sites of Sodium atom in the Crystal Structure of the Bip Nbd and Manf Sap Complex (pdb code 6h9u). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Bip Nbd and Manf Sap Complex, PDB code: 6h9u:

Sodium binding site 1 out of 1 in the Crystal Structure of the Bip Nbd and Manf Sap Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Bip Nbd and Manf Sap Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:21.9 occ:1.00 O A:HOH800 2.7 29.7 1.0 O A:HOH932 2.7 26.0 1.0 O A:HOH864 2.9 24.1 1.0 N A:THR38 3.3 16.5 1.0 N A:TYR39 3.5 17.2 1.0 O A:HOH755 3.6 27.4 1.0 N A:THR37 3.6 15.2 1.0 O A:HOH783 3.8 29.1 1.0 CB A:THR38 3.8 17.7 1.0 O A:TYR39 3.9 15.8 1.0 CA A:THR38 3.9 17.1 1.0 CA A:GLY36 4.1 14.6 1.0 N A:GLY227 4.1 20.8 1.0 C A:GLY36 4.1 14.8 1.0 OG1 A:THR38 4.1 18.7 1.0 O A:HOH897 4.2 29.7 1.0 C A:THR38 4.2 17.0 1.0 CA A:THR37 4.2 15.5 1.0 C A:THR37 4.3 16.3 1.0 O A:HOH684 4.3 27.0 1.0 CB A:THR37 4.3 15.9 1.0 CA A:GLY226 4.3 19.8 1.0 CA A:TYR39 4.4 18.1 1.0 O A:HOH767 4.5 19.9 1.0 CB A:TYR39 4.5 20.1 1.0 C A:TYR39 4.6 16.7 1.0 C A:GLY226 4.7 19.8 1.0 OG1 A:THR37 5.0 16.2 1.0

Y.Yan, C.Rato, L.Rohland, S.Preissler, D.Ron. Manf Antagonizes Nucleotide Exchange By the Endoplasmic Reticulum Chaperone Bip. Nat Commun V. 10 541 2019.
ISSN: ESSN 2041-1723
PubMed: 30710085
DOI: 10.1038/S41467-019-08450-4