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Sodium in PDB 6h79: Ssx Structure of Lysozyme in Flow - Metal-Kapton Microfluidic Device

Enzymatic activity of Ssx Structure of Lysozyme in Flow - Metal-Kapton Microfluidic Device

All present enzymatic activity of Ssx Structure of Lysozyme in Flow - Metal-Kapton Microfluidic Device:
3.2.1.17;

Protein crystallography data

The structure of Ssx Structure of Lysozyme in Flow - Metal-Kapton Microfluidic Device, PDB code: 6h79 was solved by D.C.F.Monteiro, M.Trebbin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.07 / 2.10
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.300, 79.300, 37.700, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 21.6

Other elements in 6h79:

The structure of Ssx Structure of Lysozyme in Flow - Metal-Kapton Microfluidic Device also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Ssx Structure of Lysozyme in Flow - Metal-Kapton Microfluidic Device (pdb code 6h79). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Ssx Structure of Lysozyme in Flow - Metal-Kapton Microfluidic Device, PDB code: 6h79:

Sodium binding site 1 out of 1 in 6h79

Go back to Sodium Binding Sites List in 6h79
Sodium binding site 1 out of 1 in the Ssx Structure of Lysozyme in Flow - Metal-Kapton Microfluidic Device


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Ssx Structure of Lysozyme in Flow - Metal-Kapton Microfluidic Device within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na204

b:68.3
occ:1.00
 O A:SER60 2.4 55.1 1.0
O A:CYS64 2.4 46.2 1.0
OG A:SER72 2.5 63.3 1.0
O A:ARG73 2.5 63.0 1.0
O A:HOH320 2.7 51.2 1.0
CB A:SER72 3.2 62.4 1.0
C A:CYS64 3.5 44.5 1.0
C A:ARG73 3.5 61.5 1.0
C A:SER60 3.6 52.1 1.0
CA A:ASN65 3.9 48.6 1.0
C A:SER72 3.9 64.2 1.0
N A:ARG73 3.9 61.4 1.0
N A:ASN65 4.0 48.5 1.0
CA A:SER72 4.1 61.8 1.0
N A:ASN74 4.3 59.1 1.0
O A:SER72 4.3 62.5 1.0
CA A:SER60 4.3 49.4 1.0
CA A:ARG73 4.3 58.8 1.0
CA A:ASN74 4.4 54.0 1.0
N A:CYS64 4.5 43.3 1.0
O A:ARG61 4.5 52.1 1.0
O A:HOH322 4.5 45.4 1.0
CB A:ASN74 4.6 50.0 1.0
CA A:CYS64 4.6 44.2 1.0
C A:ARG61 4.6 55.0 1.0
CB A:ASN65 4.6 51.3 1.0
N A:ARG61 4.7 53.3 1.0
CB A:SER60 4.7 49.7 1.0
OD1 A:ASN65 4.8 52.8 1.0
N A:ASP66 4.8 42.7 1.0
C A:ASN65 4.9 43.0 1.0
CA A:ARG61 4.9 55.8 1.0
CB A:THR69 4.9 50.5 1.0
O A:THR69 4.9 55.6 1.0

Reference:

D.C.F.Monteiro, M.Vakili, J.Harich, M.Sztucki, S.M.Meier, S.Horrell, I.Josts, M.Trebbin. A Microfluidic Flow-Focusing Device For Low Sample Consumption Serial Synchrotron Crystallography Experiments in Liquid Flow. J.Synchrotron Radiat. V. 26 406 2019.
ISSN: ESSN 1600-5775
PubMed: 30855249
DOI: 10.1107/S1600577519000304
Page generated: Tue Oct 8 09:14:11 2024

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