Sodium in PDB 6gd3: Structure of Hur RRM3 in Complex with Rna (Uauuua)

The structure of Structure of Hur RRM3 in Complex with Rna (Uauuua), PDB code: 6gd3 was solved by M.Pabis, M.Sattler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	6.04 / 1.35
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	33.740, 79.930, 54.870, 90.00, 90.63, 90.00
R / Rfree (%)	16.5 / 18.9

The binding sites of Sodium atom in the Structure of Hur RRM3 in Complex with Rna (Uauuua) (pdb code 6gd3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Hur RRM3 in Complex with Rna (Uauuua), PDB code: 6gd3:

Sodium binding site 1 out of 1 in the Structure of Hur RRM3 in Complex with Rna (Uauuua)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Hur RRM3 in Complex with Rna (Uauuua) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:40.0 occ:1.00 O A:PHE279 3.0 26.9 1.0 O A:ASN280 3.4 27.5 1.0 O A:HOH540 3.5 34.2 1.0 C A:ASN280 3.6 27.0 1.0 N A:ASN282 3.7 21.0 1.0 C A:PHE279 3.7 22.7 1.0 CB A:ASN282 3.9 23.4 1.0 CA A:ASN280 4.0 25.2 1.0 O A:HOH602 4.1 39.0 1.0 N A:ASN280 4.1 23.4 1.0 O A:HOH632 4.1 40.4 1.0 O A:ASP278 4.2 22.3 1.0 CA A:ASN282 4.2 22.2 1.0 N A:THR281 4.2 24.2 1.0 C A:THR281 4.2 25.8 1.0 O A:HOH541 4.3 31.3 1.0 CG A:ASN282 4.5 24.7 1.0 OD1 A:ASN282 4.5 28.4 1.0 CA A:THR281 4.6 25.1 1.0 O A:HOH530 4.7 26.9 1.0 CA A:PHE279 4.7 24.9 1.0 O A:THR281 4.9 25.1 1.0

M.Pabis, G.M.Popowicz, R.Stehle, D.Fernandez-Ramos, S.Asami, L.Warner, S.M.Garcia-Maurino, A.Schlundt, M.L.Martinez-Chantar, I.Diaz-Moreno, M.Sattler. Hur Biological Function Involves RRM3-Mediated Dimerization and Rna Binding By All Three Rrms. Nucleic Acids Res. V. 47 1011 2019.
ISSN: ESSN 1362-4962
PubMed: 30418581
DOI: 10.1093/NAR/GKY1138