Sodium in PDB 6g2y: Crystal Structure of the P97 D2 Domain in A Helical Split-Washer Conformation

Enzymatic activity of Crystal Structure of the P97 D2 Domain in A Helical Split-Washer Conformation

All present enzymatic activity of Crystal Structure of the P97 D2 Domain in A Helical Split-Washer Conformation:
3.6.4.6;

Protein crystallography data

The structure of Crystal Structure of the P97 D2 Domain in A Helical Split-Washer Conformation, PDB code: 6g2y was solved by L.Stach, R.M.L.Morgan, P.S.Freemont, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	51.50 / 2.15
*Space group*	P 6₁
*Cell size a, b, c (Å), α, β, γ (°)*	94.502, 94.502, 66.266, 90.00, 90.00, 120.00
*R / R_free (%)*	22 / 24.8

Other elements in 6g2y:

The structure of Crystal Structure of the P97 D2 Domain in A Helical Split-Washer Conformation also contains other interesting chemical elements:

Fluorine

(F)

2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the P97 D2 Domain in A Helical Split-Washer Conformation (pdb code 6g2y). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the P97 D2 Domain in A Helical Split-Washer Conformation, PDB code: 6g2y:

Sodium binding site 1 out of 1 in 6g2y

Go back to

Sodium Binding Sites List in 6g2y

Sodium binding site 1 out of 1 in the Crystal Structure of the P97 D2 Domain in A Helical Split-Washer Conformation

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the P97 D2 Domain in A Helical Split-Washer Conformation within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na808 b:74.2 occ:1.00	OD1	A:ASN624	2.2	64.3	0.6
	ND2	A:ASN624	2.9	63.0	0.6
	CG	A:ASN624	2.9	62.7	0.6
	O3B	A:ADP807	3.1	55.1	1.0
	CA	A:PRO520	3.1	56.5	1.0
	NZ	A:LYS524	3.1	56.3	1.0
	CB	A:PRO520	3.5	54.4	1.0
	CE	A:LYS524	3.8	53.6	1.0
	N	A:PRO520	3.8	58.8	1.0
	CG	A:PRO520	4.0	59.9	1.0
	PB	A:ADP807	4.2	52.0	1.0
	CB	A:ASN624	4.2	65.5	0.4
	N	A:GLY521	4.3	53.1	1.0
	C	A:PRO519	4.3	55.6	1.0
	C	A:PRO520	4.3	55.9	1.0
	O	A:GLY518	4.3	53.1	1.0
	ND2	A:ASN624	4.3	65.5	0.4
	O	A:PRO519	4.3	50.6	1.0
	CB	A:ASN624	4.4	65.7	0.6
	O1B	A:ADP807	4.4	49.7	1.0
	CD	A:PRO520	4.6	60.5	1.0
	CG	A:ASN624	4.8	67.9	0.4

Reference:

L.Stach, R.M.L.Morgan, L.Makhlouf, A.Douangamath, F.Von Delft, P.S.Freemont. Crystal Structure of the P97 D2 Domain in A Helical Split-Washer Conformation To Be Published.

Page generated: Tue Oct 8 08:54:04 2024

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