Sodium in PDB 6g00: Crystal Structure of A GH8 Xylanase From Teredinibacter Turnerae

The structure of Crystal Structure of A GH8 Xylanase From Teredinibacter Turnerae, PDB code: 6g00 was solved by C.A.Fowler, G.J.Davies, P.H.Walton, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.97 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	61.540, 72.995, 90.866, 90.00, 90.00, 90.00
R / Rfree (%)	15.3 / 17.1

The binding sites of Sodium atom in the Crystal Structure of A GH8 Xylanase From Teredinibacter Turnerae (pdb code 6g00). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A GH8 Xylanase From Teredinibacter Turnerae, PDB code: 6g00:

Sodium binding site 1 out of 1 in the Crystal Structure of A GH8 Xylanase From Teredinibacter Turnerae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A GH8 Xylanase From Teredinibacter Turnerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Na407 b:18.1 occ:1.00 O A:HOH721 2.9 28.1 1.0 N A:GLN173 3.2 13.9 1.0 O A:HOH699 3.2 27.3 1.0 CD A:ARG172 3.6 14.0 1.0 CB A:GLN173 3.7 18.8 1.0 CG A:GLN173 3.8 22.5 1.0 CA A:GLN173 4.0 14.8 1.0 CA A:ARG172 4.0 13.6 1.0 CD1 A:ILE175 4.1 14.3 1.0 C A:ARG172 4.1 13.0 1.0 CD2 A:PHE112 4.1 16.7 1.0 NE A:ARG172 4.1 13.5 1.0 CE2 A:PHE112 4.2 18.8 1.0 CG A:ARG172 4.6 13.7 1.0 O A:GLN173 4.7 13.5 1.0 O A:HOH700 4.7 40.3 1.0 C A:GLN173 4.7 13.2 1.0 CG1 A:ILE175 4.8 12.8 1.0 O A:HIS171 4.8 13.4 1.0 CB A:ARG172 4.8 13.9 1.0

C.A.Fowler, G.R.Hemsworth, F.Cuskin, S.Hart, J.Turkenburg, H.J.Gilbert, P.H.Walton, G.J.Davies. Structure and Function of A Glycoside Hydrolase Family 8 Endoxylanase From Teredinibacter Turnerae. Acta Crystallogr D Struct V. 74 946 2018BIOL.
ISSN: ISSN 2059-7983
PubMed: 30289404
DOI: 10.1107/S2059798318009737