Sodium in PDB 6csf: Crystal Structure of Sodium/Alanine Symporter Agcs with D-Alanine Bound

The structure of Crystal Structure of Sodium/Alanine Symporter Agcs with D-Alanine Bound, PDB code: 6csf was solved by J.Ma, F.E.Reyes, T.Gonen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	158.53 / 3.30
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	183.051, 183.051, 349.843, 90.00, 90.00, 120.00
R / Rfree (%)	24 / 25.3

The binding sites of Sodium atom in the Crystal Structure of Sodium/Alanine Symporter Agcs with D-Alanine Bound (pdb code 6csf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Sodium/Alanine Symporter Agcs with D-Alanine Bound, PDB code: 6csf:

Sodium binding site 1 out of 1 in the Crystal Structure of Sodium/Alanine Symporter Agcs with D-Alanine Bound


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Sodium/Alanine Symporter Agcs with D-Alanine Bound within 5.0Å range: probe atom residue distance (Å) B Occ M:Na501 b:0.6 occ:1.00 OXT M:DAL502 1.8 0.9 1.0 OD2 M:ASP308 2.4 0.7 1.0 O M:THR75 2.4 0.8 1.0 OG M:SER274 2.4 0.7 1.0 OD1 M:ASN80 2.5 0.4 1.0 O M:SER274 2.7 0.6 1.0 C M:DAL502 2.8 0.0 1.0 ND2 M:ASN80 2.9 0.4 1.0 CG M:ASN80 2.9 1.0 1.0 CA M:SER274 3.1 0.3 1.0 C M:SER274 3.1 0.8 1.0 CB M:SER274 3.2 0.3 1.0 N M:DAL502 3.4 0.8 1.0 CG M:ASP308 3.4 0.3 1.0 CA M:DAL502 3.5 0.2 1.0 C M:THR75 3.6 0.3 1.0 OD1 M:ASP308 3.7 0.4 1.0 N M:GLY77 3.7 0.6 1.0 O M:DAL502 3.8 0.2 1.0 CA M:ILE76 3.9 0.8 1.0 N M:ASN80 4.1 0.1 1.0 N M:ILE76 4.2 0.1 1.0 N M:ASN275 4.2 0.2 1.0 C M:ILE76 4.2 0.7 1.0 CB M:ASN80 4.3 0.3 1.0 N M:SER274 4.5 0.1 1.0 CA M:ASN80 4.6 0.7 1.0 C M:GLY79 4.7 95.7 1.0 CA M:GLY77 4.7 0.1 1.0 CB M:ASP308 4.7 0.3 1.0 CA M:THR75 4.7 0.5 1.0 CG2 M:THR75 4.8 0.1 1.0 O M:PHE273 4.8 0.3 1.0 O M:GLY77 4.8 0.8 1.0 CA M:ASN275 4.9 0.9 1.0 CB M:DAL502 4.9 0.8 1.0 CA M:GLY79 4.9 96.7 1.0

J.Ma, H.T.Lei, F.E.Reyes, S.Sanchez-Martinez, M.F.Sarhan, J.Hattne, T.Gonen. Structural Basis For Substrate Binding and Specificity of A Sodium-Alanine Symporter Agcs. Proc. Natl. Acad. Sci. V. 116 2086 2019U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30659158
DOI: 10.1073/PNAS.1806206116