Sodium in PDB 6co7: Structure of the NVTRPM2 Channel in Complex with CA2+

The structure of Structure of the NVTRPM2 Channel in Complex with CA2+ also contains other interesting chemical elements:

Calcium

(Ca)

4 atoms

The binding sites of Sodium atom in the Structure of the NVTRPM2 Channel in Complex with CA2+ (pdb code 6co7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Structure of the NVTRPM2 Channel in Complex with CA2+, PDB code: 6co7:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Structure of the NVTRPM2 Channel in Complex with CA2+


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the NVTRPM2 Channel in Complex with CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Na4001 b:52.5 occ:1.00 NA A:NA4002 2.1 28.7 1.0 O C:GLY1036 4.3 0.6 1.0 O B:GLY1036 4.3 0.6 1.0 O D:GLY1036 4.4 0.6 1.0 O A:GLY1036 4.4 0.6 1.0 C C:GLY1036 4.7 0.2 1.0 C B:GLY1036 4.7 0.2 1.0 C D:GLY1036 4.7 0.2 1.0 C A:GLY1036 4.8 0.2 1.0 O B:TYR1035 4.8 0.4 1.0 O C:TYR1035 4.8 0.4 1.0 O D:TYR1035 4.8 0.4 1.0 O A:TYR1035 4.8 0.4 1.0 CA C:GLY1036 4.8 0.2 1.0 CA B:GLY1036 4.8 0.2 1.0 CA D:GLY1036 4.8 0.2 1.0 CA A:GLY1036 4.8 0.2 1.0

Sodium binding site 2 out of 3 in the Structure of the NVTRPM2 Channel in Complex with CA2+


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of the NVTRPM2 Channel in Complex with CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Na4002 b:28.7 occ:1.00 NA A:NA4001 2.1 52.5 1.0 O C:TYR1035 4.2 0.4 1.0 O B:TYR1035 4.2 0.4 1.0 O D:TYR1035 4.2 0.4 1.0 O A:TYR1035 4.2 0.4 1.0 CA C:GLY1036 4.6 0.2 1.0 CA D:GLY1036 4.6 0.2 1.0 CA B:GLY1036 4.6 0.2 1.0 CA A:GLY1036 4.6 0.2 1.0

Sodium binding site 3 out of 3 in the Structure of the NVTRPM2 Channel in Complex with CA2+


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Structure of the NVTRPM2 Channel in Complex with CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Na4003 b:32.6 occ:1.00 CD1 B:ILE1082 4.9 0.4 1.0 CD1 C:ILE1082 4.9 0.4 1.0 CD1 A:ILE1082 4.9 0.4 1.0 CD1 D:ILE1082 4.9 0.4 1.0

Z.Zhang, B.Toth, A.Szollosi, J.Chen, L.Csanady. Structure of A TRPM2 Channel in Complex with CA2+Explains Unique Gating Regulation. Elife V. 7 2018.
ISSN: ESSN 2050-084X
PubMed: 29745897
DOI: 10.7554/ELIFE.36409