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Sodium in PDB 6co7: Structure of the NVTRPM2 Channel in Complex with CA2+

Other elements in 6co7:

The structure of Structure of the NVTRPM2 Channel in Complex with CA2+ also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of the NVTRPM2 Channel in Complex with CA2+ (pdb code 6co7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Structure of the NVTRPM2 Channel in Complex with CA2+, PDB code: 6co7:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in 6co7

Go back to Sodium Binding Sites List in 6co7
Sodium binding site 1 out of 3 in the Structure of the NVTRPM2 Channel in Complex with CA2+


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the NVTRPM2 Channel in Complex with CA2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na4001

b:52.5
occ:1.00
NA A:NA4002 2.1 28.7 1.0
O C:GLY1036 4.3 0.6 1.0
O B:GLY1036 4.3 0.6 1.0
O D:GLY1036 4.4 0.6 1.0
O A:GLY1036 4.4 0.6 1.0
C C:GLY1036 4.7 0.2 1.0
C B:GLY1036 4.7 0.2 1.0
C D:GLY1036 4.7 0.2 1.0
C A:GLY1036 4.8 0.2 1.0
O B:TYR1035 4.8 0.4 1.0
O C:TYR1035 4.8 0.4 1.0
O D:TYR1035 4.8 0.4 1.0
O A:TYR1035 4.8 0.4 1.0
CA C:GLY1036 4.8 0.2 1.0
CA B:GLY1036 4.8 0.2 1.0
CA D:GLY1036 4.8 0.2 1.0
CA A:GLY1036 4.8 0.2 1.0

Sodium binding site 2 out of 3 in 6co7

Go back to Sodium Binding Sites List in 6co7
Sodium binding site 2 out of 3 in the Structure of the NVTRPM2 Channel in Complex with CA2+


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of the NVTRPM2 Channel in Complex with CA2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na4002

b:28.7
occ:1.00
NA A:NA4001 2.1 52.5 1.0
O C:TYR1035 4.2 0.4 1.0
O B:TYR1035 4.2 0.4 1.0
O D:TYR1035 4.2 0.4 1.0
O A:TYR1035 4.2 0.4 1.0
CA C:GLY1036 4.6 0.2 1.0
CA D:GLY1036 4.6 0.2 1.0
CA B:GLY1036 4.6 0.2 1.0
CA A:GLY1036 4.6 0.2 1.0

Sodium binding site 3 out of 3 in 6co7

Go back to Sodium Binding Sites List in 6co7
Sodium binding site 3 out of 3 in the Structure of the NVTRPM2 Channel in Complex with CA2+


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Structure of the NVTRPM2 Channel in Complex with CA2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na4003

b:32.6
occ:1.00
CD1 B:ILE1082 4.9 0.4 1.0
CD1 C:ILE1082 4.9 0.4 1.0
CD1 A:ILE1082 4.9 0.4 1.0
CD1 D:ILE1082 4.9 0.4 1.0

Reference:

Z.Zhang, B.Toth, A.Szollosi, J.Chen, L.Csanady. Structure of A TRPM2 Channel in Complex with CA2+Explains Unique Gating Regulation. Elife V. 7 2018.
ISSN: ESSN 2050-084X
PubMed: 29745897
DOI: 10.7554/ELIFE.36409
Page generated: Tue Dec 15 12:04:41 2020

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