Sodium in PDB 6cng: The X-Ray Crystal Structure of the Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B3 Protein Loaded with Linoleic Acid to 1.47 Angstrom Resolution

The structure of The X-Ray Crystal Structure of the Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B3 Protein Loaded with Linoleic Acid to 1.47 Angstrom Resolution, PDB code: 6cng was solved by M.G.Cuypers, C.Subramanian, S.W.White, C.O.Rock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.97 / 1.47
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	52.775, 103.414, 67.469, 90.00, 112.99, 90.00
R / Rfree (%)	13.7 / 16.5

The binding sites of Sodium atom in the The X-Ray Crystal Structure of the Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B3 Protein Loaded with Linoleic Acid to 1.47 Angstrom Resolution (pdb code 6cng). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The X-Ray Crystal Structure of the Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B3 Protein Loaded with Linoleic Acid to 1.47 Angstrom Resolution, PDB code: 6cng:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The X-Ray Crystal Structure of the Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B3 Protein Loaded with Linoleic Acid to 1.47 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The X-Ray Crystal Structure of the Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B3 Protein Loaded with Linoleic Acid to 1.47 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:27.9 occ:1.00 O A:HOH552 2.3 20.7 1.0 O A:THR156 2.3 17.1 1.0 OE2 A:GLU124 2.7 17.3 1.0 O A:GLN153 2.8 19.6 1.0 O A:HOH481 3.2 17.9 1.0 C A:THR156 3.4 16.9 1.0 OG1 A:THR156 3.5 19.3 1.0 HG2 A:GLN153 3.6 21.9 1.0 HD3 A:LYS157 3.7 25.9 1.0 HA A:LYS157 3.8 14.4 1.0 CD A:GLU124 3.8 15.9 1.0 HG3 A:GLN153 3.8 21.9 1.0 H A:THR156 3.8 17.1 1.0 C A:GLN153 4.0 12.5 1.0 HZ3 A:LYS157 4.1 28.3 1.0 CG A:GLN153 4.1 18.2 1.0 OE1 A:GLU124 4.2 16.1 1.0 O A:HOH629 4.2 29.6 1.0 CA A:THR156 4.3 14.0 1.0 N A:LYS157 4.3 14.2 1.0 HA A:GLN153 4.3 17.7 1.0 N A:THR156 4.4 14.2 1.0 HE21 A:GLN153 4.4 21.0 1.0 CB A:THR156 4.4 14.5 1.0 HA A:GLU154 4.5 21.0 1.0 CA A:LYS157 4.5 12.0 1.0 HE2 A:LYS157 4.6 29.5 1.0 CD A:LYS157 4.6 21.6 1.0 O A:HOH646 4.6 31.8 1.0 O A:HOH502 4.7 17.9 1.0 CA A:GLN153 4.7 14.8 1.0 HB A:THR156 4.7 17.4 1.0 NZ A:LYS157 4.8 23.6 1.0 HG2 A:LYS157 4.9 21.2 1.0 CE A:LYS157 4.9 24.6 1.0 N A:GLU154 5.0 12.3 1.0

Sodium binding site 2 out of 2 in the The X-Ray Crystal Structure of the Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B3 Protein Loaded with Linoleic Acid to 1.47 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The X-Ray Crystal Structure of the Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B3 Protein Loaded with Linoleic Acid to 1.47 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Na302 b:30.9 occ:1.00 O D:HOH415 1.9 27.0 1.0 O D:THR156 2.3 17.6 1.0 OE1 D:GLU124 2.5 22.9 1.0 O D:HOH425 2.6 36.2 1.0 O D:GLN153 2.8 18.1 1.0 HZ2 D:LYS157 2.9 37.6 1.0 HD3 D:LYS157 3.2 36.2 1.0 O D:HOH490 3.2 17.1 1.0 C D:THR156 3.4 14.6 1.0 HZ3 D:LYS157 3.4 37.6 1.0 OG1 D:THR156 3.4 20.2 1.0 NZ D:LYS157 3.5 31.3 1.0 O1 D:GOL304 3.6 36.4 1.0 HA D:LYS157 3.6 15.3 1.0 CD D:GLU124 3.6 18.9 1.0 H D:THR156 3.8 19.6 1.0 C D:GLN153 3.9 15.7 1.0 CD D:LYS157 4.0 30.2 1.0 HE2 D:LYS157 4.0 38.2 1.0 CE D:LYS157 4.1 31.8 1.0 OE2 D:GLU124 4.2 19.3 1.0 HZ1 D:LYS157 4.2 37.6 1.0 CA D:THR156 4.3 15.2 1.0 N D:LYS157 4.3 15.2 1.0 CB D:THR156 4.3 17.6 1.0 N D:THR156 4.3 16.3 1.0 HA D:GLN153 4.4 18.1 1.0 HA D:GLU154 4.4 21.3 1.0 CA D:LYS157 4.4 12.7 1.0 HB D:THR156 4.5 21.2 1.0 H2 D:GOL304 4.5 37.9 1.0 HB3 D:GLN153 4.5 20.2 1.0 HD2 D:LYS157 4.6 36.2 1.0 O D:HOH644 4.6 26.5 1.0 CA D:GLN153 4.7 15.1 1.0 O D:HOH451 4.7 19.0 1.0 HG3 D:GLU124 4.8 20.7 1.0 C1 D:GOL304 4.8 28.1 1.0 CG D:GLU124 4.8 17.2 1.0 HG2 D:GLN153 4.8 23.0 1.0 H12 D:GOL304 4.9 33.7 1.0 HG2 D:GLU124 4.9 20.7 1.0 N D:GLU154 4.9 17.9 1.0 HG2 D:LYS157 4.9 23.0 1.0 CA D:GLU154 5.0 17.8 1.0 CG D:LYS157 5.0 19.2 1.0 O D:SER118 5.0 15.0 1.0

M.G.Cuypers, C.Subramanian, S.W.White, C.O.Rock. The X-Ray Crystal Structure of the Streptococcus Pneumoniae Fatty Acid Kinase (Fak) B3 Protein Loaded with Linoleic Acid to 1.47 Angstrom Resolution To Be Published.