Sodium in PDB 6clz: MT1-Mmp Hpx Domain with Blade 4 Loop Bound to Nanodiscs

All present enzymatic activity of MT1-Mmp Hpx Domain with Blade 4 Loop Bound to Nanodiscs:
3.4.24.80;

The structure of MT1-Mmp Hpx Domain with Blade 4 Loop Bound to Nanodiscs also contains other interesting chemical elements:

Chlorine

(Cl)

15 atoms

The binding sites of Sodium atom in the MT1-Mmp Hpx Domain with Blade 4 Loop Bound to Nanodiscs (pdb code 6clz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the MT1-Mmp Hpx Domain with Blade 4 Loop Bound to Nanodiscs, PDB code: 6clz:

Sodium binding site 1 out of 1 in the MT1-Mmp Hpx Domain with Blade 4 Loop Bound to Nanodiscs


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of MT1-Mmp Hpx Domain with Blade 4 Loop Bound to Nanodiscs within 5.0Å range: probe atom residue distance (Å) B Occ A:Na649 b:0.0 occ:1.00 O A:PRO463 2.2 0.0 1.0 O A:ASN369 2.2 0.0 1.0 O A:ASP416 2.4 0.0 1.0 HA A:ARG464 2.9 0.0 1.0 CL A:CL650 2.9 0.0 1.0 HD3 A:ARG464 3.0 0.0 1.0 C A:PRO463 3.4 0.0 1.0 C A:ASN369 3.4 0.0 1.0 C A:ASP416 3.6 0.0 1.0 HB A:THR370 3.6 0.0 1.0 HB2 A:ALA417 3.6 0.0 1.0 HB3 A:ASN369 3.8 0.0 1.0 CA A:ARG464 3.8 0.0 1.0 HA A:THR370 4.0 0.0 1.0 N A:ARG464 4.0 0.0 1.0 HB A:THR325 4.0 0.0 1.0 CD A:ARG464 4.0 0.0 1.0 HA A:ALA417 4.0 0.0 1.0 HA A:ASN369 4.0 0.0 1.0 HG1 A:THR370 4.1 0.0 1.0 O A:ASP324 4.1 0.0 1.0 HD2 A:ARG464 4.2 0.0 1.0 HB3 A:ASP416 4.2 0.0 1.0 HG1 A:THR325 4.2 0.0 1.0 HA A:ASP416 4.2 0.0 1.0 CA A:ASN369 4.3 0.0 1.0 HH22 A:ARG464 4.3 0.0 1.0 CB A:ALA417 4.4 0.0 1.0 N A:THR370 4.4 0.0 1.0 CB A:THR370 4.4 0.0 1.0 CA A:ALA417 4.4 0.0 1.0 N A:ALA417 4.5 0.0 1.0 CA A:THR370 4.5 0.0 1.0 CA A:ASP416 4.5 0.0 1.0 O A:SER462 4.5 0.0 1.0 HB3 A:ALA417 4.6 0.0 1.0 CB A:ASN369 4.6 0.0 1.0 CA A:PRO463 4.6 0.0 1.0 HA A:THR325 4.6 0.0 1.0 C A:ARG464 4.7 0.0 1.0 HB2 A:PRO463 4.7 0.0 1.0 OG1 A:THR370 4.7 0.0 1.0 H A:GLY465 4.8 0.0 1.0 CB A:ARG464 4.8 0.0 1.0 N A:PRO463 4.9 0.0 1.0 CB A:ASP416 4.9 0.0 1.0 C A:SER462 4.9 0.0 1.0 CB A:THR325 4.9 0.0 1.0 CG A:ARG464 4.9 0.0 1.0 NE A:ARG464 4.9 0.0 1.0 H A:ARG464 4.9 0.0 1.0 HD21 A:ASN369 4.9 0.0 1.0 HB3 A:SER462 5.0 0.0 1.0

T.C.Marcink, J.A.Simoncic, B.An, A.M.Knapinska, Y.G.Fulcher, N.Akkaladevi, G.B.Fields, S.R.Van Doren. MT1-Mmp Binds Membranes By Opposite Tips of Its Beta Propeller to Position It For Pericellular Proteolysis. Structure V. 27 281 2019.
ISSN: ISSN 1878-4186
PubMed: 30471921
DOI: 10.1016/J.STR.2018.10.008