Sodium in PDB 5olh: Structure of the A2A-STAR2-BRIL562-Vipadenant Complex at 2.6A Obtained From in Meso Soaking Experiments.

The structure of Structure of the A2A-STAR2-BRIL562-Vipadenant Complex at 2.6A Obtained From in Meso Soaking Experiments., PDB code: 5olh was solved by P.Rucktooa, R.K.Y.Cheng, E.Segala, T.Geng, J.C.Errey, G.A.Brown, R.Cooke, F.H.Marshall, A.S.Dore, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.82 / 2.60
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	39.400, 179.334, 141.145, 90.00, 90.00, 90.00
R / Rfree (%)	20 / 24.9

The binding sites of Sodium atom in the Structure of the A2A-STAR2-BRIL562-Vipadenant Complex at 2.6A Obtained From in Meso Soaking Experiments. (pdb code 5olh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the A2A-STAR2-BRIL562-Vipadenant Complex at 2.6A Obtained From in Meso Soaking Experiments., PDB code: 5olh:

Sodium binding site 1 out of 1 in the Structure of the A2A-STAR2-BRIL562-Vipadenant Complex at 2.6A Obtained From in Meso Soaking Experiments.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the A2A-STAR2-BRIL562-Vipadenant Complex at 2.6A Obtained From in Meso Soaking Experiments. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1203 b:54.7 occ:1.00 OD1 A:ASP52 2.4 38.0 1.0 OG A:SER91 2.5 16.4 1.0 O A:HOH1309 2.9 27.4 1.0 CB A:SER91 3.5 13.3 1.0 CG A:ASP52 3.5 35.7 1.0 ND2 A:ASN280 4.0 26.8 1.0 OD2 A:ASP52 4.0 44.3 1.0 O A:HOH1304 4.1 16.4 1.0 OG A:SER281 4.2 20.4 1.0 CD1 A:LEU48 4.3 14.4 1.0 CE1 A:PHE242 4.4 21.1 1.0 N A:ASP52 4.6 29.5 1.0 CD1 A:PHE242 4.6 19.2 1.0 O A:LEU87 4.7 19.3 1.0 O A:LEU48 4.7 25.3 1.0 CA A:ASP52 4.7 26.9 1.0 CB A:ASP52 4.7 25.7 1.0 CA A:SER91 4.7 19.4 1.0 CB A:ALA51 4.8 15.4 1.0 C A:ALA51 4.9 23.8 1.0

P.Rucktooa, R.K.Y.Cheng, E.Segala, T.Geng, J.C.Errey, G.A.Brown, R.M.Cooke, F.H.Marshall, A.S.Dore. Towards High Throughput Gpcr Crystallography: in Meso Soaking of Adenosine A2A Receptor Crystals. Sci Rep V. 8 41 2018.
ISSN: ESSN 2045-2322
PubMed: 29311713
DOI: 10.1038/S41598-017-18570-W