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Sodium in PDB 5ok2: Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution.

Enzymatic activity of Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution.

All present enzymatic activity of Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution.:
5.4.2.6;

Protein crystallography data

The structure of Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution., PDB code: 5ok2 was solved by A.J.Robertson, C.Bisson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.39 / 1.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.540, 54.280, 104.670, 90.00, 90.00, 90.00
R / Rfree (%) 14.8 / 17

Other elements in 5ok2:

The structure of Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution. also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Magnesium (Mg) 2 atoms
Aluminium (Al) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution. (pdb code 5ok2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution., PDB code: 5ok2:

Sodium binding site 1 out of 1 in 5ok2

Go back to Sodium Binding Sites List in 5ok2
Sodium binding site 1 out of 1 in the Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the D10N Mutant of Beta-Phosphoglucomutase From Lactococcus Lactis Inhibited with Glucose 6-Phosphate and Tetrafluoroaluminate to 1.1A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na307

b:17.9
occ:1.00
O A:GLU124 2.3 10.7 1.0
OD1 A:ASN127 2.4 14.4 1.0
O A:HOH584 2.4 35.0 1.0
O A:HOH474 2.5 20.1 1.0
O A:HOH590 2.5 28.3 1.0
C A:GLU124 3.4 9.9 1.0
CG A:ASN127 3.6 12.7 1.0
O A:ARG125 4.1 9.8 1.0
CA A:ARG125 4.2 10.2 1.0
C A:ARG125 4.2 8.8 1.0
N A:ARG125 4.2 9.6 1.0
N A:ASN127 4.2 8.9 1.0
CA A:GLU124 4.3 9.8 1.0
ND2 A:ASN127 4.4 15.9 1.0
CA A:ASN127 4.4 9.8 1.0
CB A:ASN127 4.6 10.7 1.0
CB A:GLU124 4.8 12.4 1.0
NH1 A:ARG125 4.8 18.1 1.0
N A:MET126 4.9 8.1 1.0

Reference:

L.A.Johnson, A.J.Robertson, N.J.Baxter, C.R.Trevitt, C.Bisson, Y.Jin, H.P.Wood, A.M.Hounslow, M.J.Cliff, G.M.Blackburn, M.W.Bowler, J.P.Waltho. Van Der Waals Contact Between Nucleophile and Transferring Phosphorus Is Insufficient to Achieve Enzyme Transition-State Architecture Acs Catalysis 2018.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.8B01612
Page generated: Mon Oct 7 23:12:39 2024

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