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Sodium in PDB 5ojo: Sirtuin 5 From Danio Rerio in Complex with 3-Hydroxy-3-Methylglutaryl- CPS1 Peptide
Enzymatic activity of Sirtuin 5 From Danio Rerio in Complex with 3-Hydroxy-3-Methylglutaryl- CPS1 Peptide
All present enzymatic activity of Sirtuin 5 From Danio Rerio in Complex with 3-Hydroxy-3-Methylglutaryl- CPS1 Peptide:
6.3.4.16;
6.3.4.16;
Protein crystallography data
The structure of Sirtuin 5 From Danio Rerio in Complex with 3-Hydroxy-3-Methylglutaryl- CPS1 Peptide, PDB code: 5ojo
was solved by
M.Pannek,
C.Steegborn,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 48.67 / 3.10 |
| Space group | P 65 2 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 87.540, 87.540, 316.920, 90.00, 90.00, 120.00 |
| R / Rfree (%) | 19.6 / 26.6 |
Other elements in 5ojo:
The structure of Sirtuin 5 From Danio Rerio in Complex with 3-Hydroxy-3-Methylglutaryl- CPS1 Peptide also contains other interesting chemical elements:
| Zinc | (Zn) | 2 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the Sirtuin 5 From Danio Rerio in Complex with 3-Hydroxy-3-Methylglutaryl- CPS1 Peptide
(pdb code 5ojo). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Sirtuin 5 From Danio Rerio in Complex with 3-Hydroxy-3-Methylglutaryl- CPS1 Peptide, PDB code: 5ojo:
In total only one binding site of Sodium was determined in the Sirtuin 5 From Danio Rerio in Complex with 3-Hydroxy-3-Methylglutaryl- CPS1 Peptide, PDB code: 5ojo:
Sodium binding site 1 out of 1 in 5ojo
Go back to
Sodium Binding Sites List in 5ojo
Sodium binding site 1 out
of 1 in the Sirtuin 5 From Danio Rerio in Complex with 3-Hydroxy-3-Methylglutaryl- CPS1 Peptide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Sirtuin 5 From Danio Rerio in Complex with 3-Hydroxy-3-Methylglutaryl- CPS1 Peptide within 5.0Å range:
|
Reference:
M.Pannek,
Z.Simic,
M.Fuszard,
M.Meleshin,
D.Rotili,
A.Mai,
M.Schutkowski,
C.Steegborn.
Crystal Structures of the Mitochondrial Deacylase Sirtuin 4 Reveal Isoform-Specific Acyl Recognition and Regulation Features. Nat Commun V. 8 1513 2017.
ISSN: ESSN 2041-1723
PubMed: 29138502
DOI: 10.1038/S41467-017-01701-2
Page generated: Mon Aug 18 01:32:17 2025
ISSN: ESSN 2041-1723
PubMed: 29138502
DOI: 10.1038/S41467-017-01701-2
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