Sodium in PDB 5o94: X-Ray Structure of A Zinc Binding GB1 Mutant

The structure of X-Ray Structure of A Zinc Binding GB1 Mutant, PDB code: 5o94 was solved by U.Rothlisberger, E.Bozkurt, R.Hovius, M.A.S.Perez, N.J.Browning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.92 / 1.90
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	54.178, 54.178, 81.077, 90.00, 90.00, 120.00
R / Rfree (%)	20.7 / 23.4

The structure of X-Ray Structure of A Zinc Binding GB1 Mutant also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Sodium atom in the X-Ray Structure of A Zinc Binding GB1 Mutant (pdb code 5o94). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of A Zinc Binding GB1 Mutant, PDB code: 5o94:

Sodium binding site 1 out of 1 in the X-Ray Structure of A Zinc Binding GB1 Mutant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of A Zinc Binding GB1 Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Na103 b:61.6 occ:1.00 O A:HOH207 2.4 58.3 1.0 OE1 A:GLU61 3.0 46.3 1.0 N A:THR16 3.2 48.4 1.0 OG1 A:THR16 3.2 53.3 1.0 N A:LEU17 3.4 56.0 1.0 N A:LYS15 3.4 45.4 1.0 CB A:LEU17 3.8 55.0 1.0 CD A:GLU61 3.9 47.9 1.0 OE2 A:GLU61 3.9 52.9 1.0 CA A:THR16 3.9 54.5 1.0 C A:THR16 4.0 55.9 1.0 C A:GLY14 4.0 41.0 1.0 O A:HOH233 4.0 67.2 1.0 CA A:LYS15 4.1 47.0 1.0 C A:LYS15 4.1 48.8 1.0 CA A:GLY14 4.1 41.5 1.0 CB A:LYS15 4.2 46.5 1.0 CA A:LEU17 4.2 56.0 1.0 CB A:THR16 4.2 54.6 1.0 O A:LEU17 4.7 58.0 1.0 O A:GLY14 4.9 45.4 1.0 O A:THR16 4.9 53.4 1.0

E.Bozkurt, M.A.S.Perez, R.Hovius, N.J.Browning, U.Rothlisberger. Genetic Algorithm Based Design and Experimental Characterization of A Highly Thermostable Metalloprotein. J. Am. Chem. Soc. V. 140 4517 2018.
ISSN: ESSN 1520-5126
PubMed: 29336153
DOI: 10.1021/JACS.7B10660