Sodium in PDB 5g3d: Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase

Enzymatic activity of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase

All present enzymatic activity of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase:
1.10.3.2;

Protein crystallography data

The structure of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase, PDB code: 5g3d was solved by R.Ruiz-Arellano, A.Diaz, E.Rosas, E.Rudino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	19.70 / 1.78
*Space group*	C 2 2 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	93.744, 110.332, 96.484, 90.00, 90.00, 90.00
*R / R_free (%)*	14.4 / 18.1

Other elements in 5g3d:

The structure of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase also contains other interesting chemical elements:

Copper

(Cu)

3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase (pdb code 5g3d). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase, PDB code: 5g3d:

Sodium binding site 1 out of 1 in 5g3d

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Sodium Binding Sites List in 5g3d

Sodium binding site 1 out of 1 in the Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na1477 b:40.3 occ:1.00	O	A:HOH2440	2.5	43.4	1.0
	O	A:HOH2059	2.5	33.8	1.0
	O	A:HOH2057	2.5	13.6	1.0
	NH2	A:ARG87	3.1	49.7	1.0
	OG1	A:THR47	3.5	21.4	1.0
	O	A:HOH2002	3.7	51.3	1.0
	N	A:GLY65	3.7	10.5	1.0
	CB	A:THR47	3.7	19.0	1.0
	CA	A:GLY65	4.0	12.7	1.0
	O	A:HOH2056	4.2	27.9	1.0
	CB	A:SER45	4.2	16.9	0.5
	CB	A:SER45	4.2	17.1	0.5
	O	A:SER45	4.2	14.0	0.5
	CG2	A:THR47	4.3	20.8	1.0
	OG	A:SER45	4.3	21.9	0.5
	CZ	A:ARG87	4.3	64.0	1.0
	O	A:HOH2120	4.3	48.4	1.0
	OG1	A:THR49	4.4	20.0	1.0
	C	A:GLY64	4.4	12.6	1.0
	O	A:SER45	4.5	13.2	0.5
	O	A:HOH2058	4.6	42.8	1.0
	N	A:GLY64	4.8	13.8	1.0
	CA	A:GLY64	4.8	10.2	1.0
	OG1	A:THR62	4.8	14.8	1.0
	NE	A:ARG87	4.8	56.0	1.0
	C	A:SER45	4.9	12.2	0.5
	C	A:SER45	5.0	12.2	0.5

Reference:

R.Ruiz-Arellano, A.Diaz, E.Rosas, V.Stojanoff, E.Rudino. Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase To Be Published.

Page generated: Tue Dec 15 11:00:59 2020

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