Atomistry » Sodium » PDB 5fje-5g3f » 5g3d
Atomistry »
  Sodium »
    PDB 5fje-5g3f »
      5g3d »

Sodium in PDB 5g3d: Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase

Enzymatic activity of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase

All present enzymatic activity of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase:
1.10.3.2;

Protein crystallography data

The structure of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase, PDB code: 5g3d was solved by R.Ruiz-Arellano, A.Diaz, E.Rosas, E.Rudino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.70 / 1.78
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 93.744, 110.332, 96.484, 90.00, 90.00, 90.00
R / Rfree (%) 14.4 / 18.1

Other elements in 5g3d:

The structure of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase also contains other interesting chemical elements:

Copper (Cu) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase (pdb code 5g3d). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase, PDB code: 5g3d:

Sodium binding site 1 out of 1 in 5g3d

Go back to Sodium Binding Sites List in 5g3d
Sodium binding site 1 out of 1 in the Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Preserving Metallic Sites Affected By Radiation Damage the CUT2 Ccase in Thermus Thermophilus Multicopper Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1477

b:40.3
occ:1.00
 O A:HOH2440 2.5 43.4 1.0
O A:HOH2059 2.5 33.8 1.0
O A:HOH2057 2.5 13.6 1.0
NH2 A:ARG87 3.1 49.7 1.0
OG1 A:THR47 3.5 21.4 1.0
O A:HOH2002 3.7 51.3 1.0
N A:GLY65 3.7 10.5 1.0
CB A:THR47 3.7 19.0 1.0
CA A:GLY65 4.0 12.7 1.0
O A:HOH2056 4.2 27.9 1.0
CB A:SER45 4.2 16.9 0.5
CB A:SER45 4.2 17.1 0.5
O A:SER45 4.2 14.0 0.5
CG2 A:THR47 4.3 20.8 1.0
OG A:SER45 4.3 21.9 0.5
CZ A:ARG87 4.3 64.0 1.0
O A:HOH2120 4.3 48.4 1.0
OG1 A:THR49 4.4 20.0 1.0
C A:GLY64 4.4 12.6 1.0
O A:SER45 4.5 13.2 0.5
O A:HOH2058 4.6 42.8 1.0
N A:GLY64 4.8 13.8 1.0
CA A:GLY64 4.8 10.2 1.0
OG1 A:THR62 4.8 14.8 1.0
NE A:ARG87 4.8 56.0 1.0
C A:SER45 4.9 12.2 0.5
C A:SER45 5.0 12.2 0.5

Reference:

R.Ruiz-Arellano, A.Diaz, E.Rosas, V.Stojanoff, E.Rudino. Preserving Metallic Sites Affected By Radiation Damage the CUT2 Case in Thermus Thermophilus Multicopper Oxidase To Be Published.
Page generated: Mon Oct 7 21:08:39 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy