Sodium in PDB 5g2i: S. Enterica Hisa Mutant DUP13-15(Vvr)

All present enzymatic activity of S. Enterica Hisa Mutant DUP13-15(Vvr):
5.3.1.16;

The structure of S. Enterica Hisa Mutant DUP13-15(Vvr), PDB code: 5g2i was solved by X.Guo, A.Soderholm, M.Newton, J.Nasvall, F.Duarte, D.Andersson, W.Patrick, M.Selmer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.18 / 1.60
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	86.610, 86.610, 121.290, 90.00, 90.00, 120.00
R / Rfree (%)	18.3 / 20.8

The binding sites of Sodium atom in the S. Enterica Hisa Mutant DUP13-15(Vvr) (pdb code 5g2i). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the S. Enterica Hisa Mutant DUP13-15(Vvr), PDB code: 5g2i:

Sodium binding site 1 out of 1 in the S. Enterica Hisa Mutant DUP13-15(Vvr)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of S. Enterica Hisa Mutant DUP13-15(Vvr) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1247 b:30.0 occ:1.00 O3 A:PO41246 2.4 25.2 0.6 O3 A:PO41246 2.7 29.9 0.4 O A:ILE205 2.8 26.1 1.0 N A:ALA227 2.8 17.8 1.0 O4 A:PO41246 3.2 27.2 0.6 CB A:ALA227 3.2 20.6 1.0 P A:PO41246 3.4 25.2 0.6 N A:ARG226 3.4 18.9 1.0 CG A:ARG226 3.5 34.4 1.0 N A:GLY225 3.6 16.6 1.0 CA A:ALA227 3.6 17.4 1.0 CB A:ILE205 3.7 19.2 1.0 CG1 A:VAL224 3.8 17.2 1.0 C A:ARG226 3.8 19.1 1.0 P A:PO41246 3.8 32.1 0.4 C A:ILE205 3.9 25.2 1.0 C A:GLY225 3.9 17.6 1.0 CA A:ARG226 4.0 19.7 1.0 O4 A:PO41246 4.0 39.0 0.4 CG2 A:ILE205 4.1 22.5 1.0 CA A:GLY225 4.3 17.4 1.0 CA A:ILE205 4.3 25.4 1.0 CB A:ARG226 4.3 26.5 1.0 O1 A:PO41246 4.3 20.9 0.6 O2 A:PO41246 4.4 19.1 0.4 C A:VAL224 4.4 15.7 1.0 CA A:VAL224 4.4 15.3 1.0 O2 A:PO41246 4.4 30.2 0.6 O A:GLY225 4.5 17.0 1.0 N A:ILE205 4.7 25.1 1.0 CD A:ARG226 4.7 45.9 1.0 CB A:VAL224 4.8 15.3 1.0 C A:ALA227 4.8 19.2 1.0 N A:LEU228 4.9 16.8 1.0 CG1 A:ILE205 4.9 24.9 1.0 O A:ARG226 5.0 19.0 1.0

M.S.Newton, X.Guo, A.Soderholm, J.Nasvall, P.Lundstrom, D.I.Andersson, M.Selmer, W.M.Patrick. Structural and Functional Innovations in the Real-Time Evolution of New ( Beta Alpha )8 Barrel Enzymes. Proc. Natl. Acad. Sci. V. 114 4727 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28416687
DOI: 10.1073/PNAS.1618552114