Sodium in PDB 5g27: Structure of Spin-Labelled T4 Lysozyme Mutant L118C-R1 at Room Temperature

Enzymatic activity of Structure of Spin-Labelled T4 Lysozyme Mutant L118C-R1 at Room Temperature

All present enzymatic activity of Structure of Spin-Labelled T4 Lysozyme Mutant L118C-R1 at Room Temperature:
3.2.1.17;

Protein crystallography data

The structure of Structure of Spin-Labelled T4 Lysozyme Mutant L118C-R1 at Room Temperature, PDB code: 5g27 was solved by U.Gohlke, P.Consentius, B.Loll, R.Mueller, M.Kaupp, U.Heinemann, T.Risse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	19.58 / 1.61
*Space group*	P 3₂ 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	60.934, 60.934, 97.002, 90.00, 90.00, 120.00
*R / R_free (%)*	15.05 / 16.91

Other elements in 5g27:

The structure of Structure of Spin-Labelled T4 Lysozyme Mutant L118C-R1 at Room Temperature also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Spin-Labelled T4 Lysozyme Mutant L118C-R1 at Room Temperature (pdb code 5g27). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Spin-Labelled T4 Lysozyme Mutant L118C-R1 at Room Temperature, PDB code: 5g27:

Sodium binding site 1 out of 1 in 5g27

Go back to

Sodium Binding Sites List in 5g27

Sodium binding site 1 out of 1 in the Structure of Spin-Labelled T4 Lysozyme Mutant L118C-R1 at Room Temperature

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Spin-Labelled T4 Lysozyme Mutant L118C-R1 at Room Temperature within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na504 b:46.4 occ:1.00	O	A:GLU11	2.8	24.1	1.0
	OH	A:TYR18	2.8	39.0	1.0
	OE1	A:GLU11	2.9	25.5	1.0
	O	A:HOH2021	3.0	41.4	1.0
	O	A:HOH2035	3.0	57.8	1.0
	O	A:HOH2017	3.1	52.7	1.0
	O	A:HOH2020	3.3	41.1	1.0
	C	A:GLU11	3.7	22.6	1.0
	CA	A:GLU11	3.7	18.3	1.0
	O	A:HOH2019	3.8	53.1	1.0
	CZ	A:TYR18	3.9	34.7	1.0
	CB	A:GLU11	4.0	18.4	1.0
	CD	A:GLU11	4.0	26.9	1.0
	CE2	A:TYR18	4.1	29.8	1.0
	CA	A:GLY30	4.1	19.1	1.0
	N	A:GLY30	4.3	18.3	1.0
	CG	A:GLU11	4.6	20.5	1.0
	N	A:GLY12	4.9	19.3	1.0
	CG2	A:THR26	5.0	22.0	1.0

Reference:

P.Consentius, U.Gohlke, B.Loll, U.Heinemann, M.Kaupp, M.Wahl, T.Risse. Tracking Transient Conformational States of T4 Lysozyme at Room Temperature Combining X-Ray Crystallography and Site-Directed Spin Labeling. J.Am.Chem.Soc. V. 138 12868 2016.
ISSN: ISSN 0002-7863
PubMed: 27673570
DOI: 10.1021/JACS.6B05507

Page generated: Mon Oct 7 21:08:04 2024

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