Sodium in PDB 5fus: Crystal Structure of B. Cenocepacia Dfsa

All present enzymatic activity of Crystal Structure of B. Cenocepacia Dfsa:
4.2.1.17;

The structure of Crystal Structure of B. Cenocepacia Dfsa, PDB code: 5fus was solved by F.Spadaro, V.C.Scoffone, L.R.Chiarelli, M.Fumagalli, S.Buroni, G.Riccardi, F.Forneris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.424 / 1.87
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	128.070, 128.070, 128.890, 90.00, 90.00, 120.00
R / Rfree (%)	16.62 / 19.77

The binding sites of Sodium atom in the Crystal Structure of B. Cenocepacia Dfsa (pdb code 5fus). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of B. Cenocepacia Dfsa, PDB code: 5fus:

Sodium binding site 1 out of 1 in the Crystal Structure of B. Cenocepacia Dfsa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of B. Cenocepacia Dfsa within 5.0Å range: probe atom residue distance (Å) B Occ C:Na1282 b:42.7 occ:1.00 O4 A:SO41278 2.5 68.8 1.0 OE1 C:GLU247 2.7 20.3 1.0 O A:HOH2166 2.9 49.6 1.0 O A:HOH2150 2.9 32.0 1.0 O C:GLN242 2.9 22.1 1.0 OG C:SER244 3.3 21.9 1.0 S A:SO41278 3.5 68.8 1.0 CB C:GLU247 3.5 17.3 1.0 N C:SER244 3.5 20.6 1.0 OE1 A:GLN242 3.6 49.4 1.0 O3 A:SO41278 3.7 73.5 1.0 O2 A:SO41278 3.7 75.6 1.0 NH2 C:ARG175 3.7 17.5 1.0 CD C:GLU247 3.8 23.2 1.0 CB C:SER244 3.9 19.7 1.0 C C:GLN242 4.1 21.8 1.0 CD A:GLN242 4.2 54.5 1.0 NE2 A:GLN242 4.2 55.0 1.0 CG C:GLU247 4.3 16.0 1.0 NH1 A:ARG239 4.3 20.6 1.0 CA C:SER244 4.3 21.1 1.0 CA C:LEU243 4.3 21.2 1.0 C C:LEU243 4.4 25.1 1.0 N C:LEU243 4.7 19.9 1.0 CA C:GLU247 4.7 17.9 1.0 O1 A:SO41278 4.8 66.7 1.0 OE2 C:GLU247 4.8 18.3 1.0 NH2 A:ARG239 4.8 24.1 1.0 N C:GLU247 4.8 17.3 1.0 CZ C:ARG175 4.9 18.6 1.0 O C:SER244 5.0 20.9 1.0

F.Spadaro, V.C.Scoffone, L.R.Chiarelli, M.Fumagalli, S.Buroni, G.Riccardi, F.Forneris. The Crystal Structure of Burkholderia Cenocepacia Dfsa Provides Insights Into Substrate Recognition and Quorum Sensing Fatty Acid Biosynthesis. Biochemistry V. 55 3241 2016.
ISSN: ISSN 0006-2960
PubMed: 27198181
DOI: 10.1021/ACS.BIOCHEM.6B00178