Sodium in PDB 5fs5: Breaking Down the Wall: Mutation of the Tyrosine Gate of the Universal Escherichia Coli Fimbrial Adhesin Fimh

The structure of Breaking Down the Wall: Mutation of the Tyrosine Gate of the Universal Escherichia Coli Fimbrial Adhesin Fimh, PDB code: 5fs5 was solved by J.Bouckaert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	16.25 / 1.42
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	59.565, 96.917, 22.999, 90.00, 90.00, 90.00
R / Rfree (%)	10.6 / 16

The binding sites of Sodium atom in the Breaking Down the Wall: Mutation of the Tyrosine Gate of the Universal Escherichia Coli Fimbrial Adhesin Fimh (pdb code 5fs5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Breaking Down the Wall: Mutation of the Tyrosine Gate of the Universal Escherichia Coli Fimbrial Adhesin Fimh, PDB code: 5fs5:

Sodium binding site 1 out of 1 in the Breaking Down the Wall: Mutation of the Tyrosine Gate of the Universal Escherichia Coli Fimbrial Adhesin Fimh


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Breaking Down the Wall: Mutation of the Tyrosine Gate of the Universal Escherichia Coli Fimbrial Adhesin Fimh within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1160 b:10.9 occ:1.00 HE21 A:GLN41 2.5 20.4 1.0 H A:ASN7 2.7 6.9 1.0 HB1 A:ALA6 2.8 11.4 1.0 HB A:THR5 2.8 9.9 1.0 H A:ALA6 2.9 8.7 1.0 O A:HOH2025 3.0 11.9 1.0 NE2 A:GLN41 3.4 17.0 1.0 HB3 A:GLN41 3.4 13.5 1.0 N A:ALA6 3.4 7.2 1.0 HG1 A:THR5 3.4 10.5 1.0 N A:ASN7 3.4 5.7 1.0 CB A:ALA6 3.6 9.5 1.0 HG2 A:GLN41 3.6 15.1 1.0 CB A:THR5 3.6 8.2 1.0 HB3 A:ASN7 3.7 8.2 1.0 OG1 A:THR5 3.7 8.7 1.0 ND2 A:ASN7 3.7 9.7 1.0 CG A:ASN7 3.8 8.8 1.0 HE22 A:GLN41 3.8 20.4 1.0 HD21 A:ASN7 3.8 11.6 1.0 CA A:ALA6 3.9 7.7 1.0 HD22 A:ASN7 3.9 11.6 1.0 HB3 A:ALA6 4.0 11.4 1.0 HG11 A:VAL20 4.0 12.0 1.0 C A:ALA6 4.1 6.6 1.0 CB A:GLN41 4.1 11.2 1.0 O A:HOH2020 4.1 25.6 1.0 CB A:ASN7 4.1 6.9 1.0 O A:GLN41 4.1 7.3 1.0 CG A:GLN41 4.2 12.6 1.0 HA A:GLN41 4.2 10.5 1.0 OD1 A:ASN7 4.2 9.7 1.0 C A:THR5 4.2 7.1 1.0 CD A:GLN41 4.3 16.2 1.0 HB2 A:ALA6 4.3 11.4 1.0 CA A:ASN7 4.4 6.2 1.0 CA A:THR5 4.5 7.6 1.0 HG22 A:THR5 4.5 10.9 1.0 CA A:GLN41 4.6 8.8 1.0 H A:TYR21 4.6 9.5 1.0 CG2 A:THR5 4.7 9.1 1.0 HA A:THR5 4.7 9.1 1.0 HA A:ALA6 4.8 9.2 1.0 C A:GLN41 4.9 7.9 1.0 HA A:VAL20 4.9 8.4 1.0 HB2 A:GLN41 4.9 13.5 1.0 CG1 A:VAL20 4.9 10.0 1.0 HG23 A:THR5 5.0 10.9 1.0 HG13 A:VAL20 5.0 12.0 1.0 HA A:ASN7 5.0 7.4 1.0

S.Rabbani, E.M.Krammer, G.Roos, A.Zalewski, R.Preston, S.Eid, P.Zihlmann, M.Prevost, M.F.Lensink, A.Thompson, B.Ernst, J.Bouckaert. Mutation of TYR137 of the Universal Escherichia Coli Fimbrial Adhesin Fimh Relaxes the Tyrosine Gate Prior to Mannose Binding. Iucrj V. 4 7 2017.
ISSN: ESSN 2052-2525
PubMed: 28250938
DOI: 10.1107/S2052252516016675