Sodium in PDB 5fqu: Orthorhombic Crystal Structure of of Plpd (Selenomethionine Derivative)

The structure of Orthorhombic Crystal Structure of of Plpd (Selenomethionine Derivative), PDB code: 5fqu was solved by P.Vinicius Da Mata Madeira, S.Zouhir, P.Basso, D.Neves, A.Laubier, R.Salacha, S.Bleves, E.Faudry, C.Contreras-Martel, A.Dessen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	85.57 / 2.74
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	46.743, 113.393, 130.416, 90.00, 90.00, 90.00
R / Rfree (%)	19.6 / 23.8

The binding sites of Sodium atom in the Orthorhombic Crystal Structure of of Plpd (Selenomethionine Derivative) (pdb code 5fqu). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Orthorhombic Crystal Structure of of Plpd (Selenomethionine Derivative), PDB code: 5fqu:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Orthorhombic Crystal Structure of of Plpd (Selenomethionine Derivative)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Orthorhombic Crystal Structure of of Plpd (Selenomethionine Derivative) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1313 b:40.0 occ:1.00 N1 B:AZI1312 3.0 38.1 1.0 N2 B:AZI1312 3.3 49.0 1.0 N3 B:AZI1312 4.0 36.5 1.0

Sodium binding site 2 out of 2 in the Orthorhombic Crystal Structure of of Plpd (Selenomethionine Derivative)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Orthorhombic Crystal Structure of of Plpd (Selenomethionine Derivative) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1314 b:43.2 occ:1.00 N3 B:AZI1312 2.9 36.5 1.0 N2 B:AZI1312 3.2 49.0 1.0 N B:ARG203 3.5 96.5 1.0 C B:ARG203 3.7 83.2 1.0 O B:ARG203 3.8 89.4 1.0 N1 B:AZI1312 3.8 38.1 1.0 NE A:ARG239 3.9 0.9 1.0 N B:LEU204 3.9 82.9 1.0 CA B:ARG203 4.1 76.2 1.0 CD A:ARG239 4.2 95.2 1.0 CG B:GLU199 4.4 0.9 1.0 CB B:GLU199 4.5 88.7 1.0 CG A:ARG239 4.6 88.3 1.0 CD B:GLU199 4.7 0.8 1.0 OE1 B:GLU199 4.7 0.6 1.0 CA B:LEU204 4.7 76.2 1.0 CB B:LEU204 4.9 72.8 1.0 CA B:GLU199 5.0 90.5 1.0 CZ A:ARG239 5.0 96.1 1.0

P.V.Da Mata Madeira, S.Zouhir, P.Basso, D.Neves, A.Laubier, R.Salacha, S.Bleves, E.Faudry, C.Contreras-Martel, A.Dessen. Structural Basis of Lipid Targeting and Destruction By the Type V Secretion System of Pseudomonas Aeruginosa. J.Mol.Biol. V. 428 1790 2016.
ISSN: ISSN 0022-2836
PubMed: 27012424
DOI: 10.1016/J.JMB.2016.03.012