Sodium in PDB 5fok: Crystal Structure of the Siderophore Receptor Piua From Pseudomonas Aeruginosa

The structure of Crystal Structure of the Siderophore Receptor Piua From Pseudomonas Aeruginosa, PDB code: 5fok was solved by L.Moynie, J.H.Naismith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	71.93 / 1.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	194.010, 132.970, 73.590, 90.00, 102.21, 90.00
R / Rfree (%)	18.8 / 21.1

The binding sites of Sodium atom in the Crystal Structure of the Siderophore Receptor Piua From Pseudomonas Aeruginosa (pdb code 5fok). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Crystal Structure of the Siderophore Receptor Piua From Pseudomonas Aeruginosa, PDB code: 5fok:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Crystal Structure of the Siderophore Receptor Piua From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Siderophore Receptor Piua From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1726 b:25.1 occ:1.00 O21 A:C8E1725 2.3 25.5 1.0 O12 A:C8E1725 2.3 30.7 1.0 O A:HOH2134 2.3 29.8 1.0 O A:HOH2324 2.4 21.6 1.0 O9 A:C8E1725 2.4 27.9 1.0 O15 A:C8E1725 2.5 31.2 1.0 O18 A:C8E1725 2.5 30.9 1.0 C8 A:C8E1725 3.2 28.1 1.0 C11 A:C8E1725 3.3 30.4 1.0 C13 A:C8E1725 3.3 29.3 1.0 C20 A:C8E1725 3.3 24.4 1.0 C10 A:C8E1725 3.3 34.5 1.0 C14 A:C8E1725 3.3 31.7 1.0 C17 A:C8E1725 3.4 34.1 1.0 C16 A:C8E1725 3.4 30.0 1.0 C19 A:C8E1725 3.4 28.5 1.0 OD2 A:ASP234 4.3 31.2 1.0 OD1 A:ASP234 4.3 24.0 1.0 O A:HOH2184 4.4 25.0 1.0 C7 A:C8E1725 4.5 35.1 1.0 CE A:LYS274 4.7 28.7 1.0 NZ A:LYS274 4.7 27.6 1.0 O A:HOH2185 4.8 20.8 1.0 CG A:ASP234 4.8 24.7 1.0

Sodium binding site 2 out of 3 in the Crystal Structure of the Siderophore Receptor Piua From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Siderophore Receptor Piua From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1724 b:41.7 occ:1.00 O9 B:C8E1721 2.7 34.2 1.0 O15 B:C8E1721 2.8 37.8 1.0 O12 B:C8E1721 3.0 36.7 1.0 O B:HOH2191 3.0 31.1 1.0 N B:GLU349 3.2 24.7 1.0 CB B:PHE348 3.4 26.1 1.0 C13 B:C8E1721 3.5 38.6 1.0 CA B:PHE348 3.5 26.0 1.0 C11 B:C8E1721 3.6 35.5 1.0 O B:HOH2270 3.6 31.2 1.0 C10 B:C8E1721 3.7 37.8 1.0 O18 B:C8E1721 3.7 44.1 1.0 C17 B:C8E1721 3.7 43.7 1.0 C14 B:C8E1721 3.7 37.2 1.0 C16 B:C8E1721 3.8 42.3 1.0 C8 B:C8E1721 3.8 32.9 1.0 C7 B:C8E1721 3.8 29.6 1.0 C B:PHE348 3.8 25.0 1.0 O B:GLU349 4.1 29.0 1.0 CA B:GLU349 4.3 28.1 1.0 CB B:GLU349 4.4 31.1 1.0 CG B:GLU349 4.6 34.4 1.0 O B:ASN347 4.6 22.9 1.0 C19 B:C8E1721 4.6 50.1 1.0 C B:GLU349 4.7 28.8 1.0 N B:PHE348 4.8 24.5 1.0 CG B:PHE348 4.8 25.4 1.0

Sodium binding site 3 out of 3 in the Crystal Structure of the Siderophore Receptor Piua From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of the Siderophore Receptor Piua From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1725 b:51.6 occ:1.00 OD2 B:ASP234 2.6 37.9 1.0 O15 B:C8E1723 3.3 33.5 0.5 O21 B:C8E1723 3.3 21.8 0.5 O9 B:C8E1723 3.4 29.7 0.5 O12 B:C8E1723 3.4 34.3 0.5 CG B:ASP234 3.5 32.1 1.0 NZ B:LYS274 3.7 43.8 1.0 OD1 B:ASP234 3.7 28.1 1.0 CE B:LYS274 3.8 38.7 1.0 C13 B:C8E1723 3.8 34.6 0.5 C11 B:C8E1723 3.9 29.4 0.5 C14 B:C8E1723 4.1 33.1 0.5 C17 B:C8E1723 4.2 30.4 0.5 C10 B:C8E1723 4.3 29.1 0.5 C16 B:C8E1723 4.3 29.6 0.5 C8 B:C8E1723 4.3 24.0 0.5 C19 B:C8E1723 4.4 24.7 0.5 C20 B:C8E1723 4.4 22.6 0.5 O18 B:C8E1723 4.5 26.7 0.5 CB B:ASP234 4.9 26.6 1.0

L.Moynie, A.Luscher, D.Rolo, D.Pletzer, A.Tortajada, H.Weingart, Y.Braun, M.G.Page, J.H.Naismith, T.Kohler. Structure and Function of the Piua and Pira Siderophore-Drug Receptors From Pseudomonas Aeruginosa and Acinetobacter Baumannii. Antimicrob. Agents V. 61 2017CHEMOTHER..
ISSN: ESSN 1098-6596
PubMed: 28137795
DOI: 10.1128/AAC.02531-16