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Sodium in PDB 5f81: Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography

Enzymatic activity of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography

All present enzymatic activity of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography:
3.2.1.17;

Protein crystallography data

The structure of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography, PDB code: 5f81 was solved by C.G.Roessler, R.Agarwal, M.Allaire, R.Alonso-Mori, B.Andi, J.F.R.Bachega, M.Bommer, A.S.Brewster, M.C.Browne, R.Chatterjee, E.Cho, A.E.Cohen, M.Cowan, S.Datwani, V.L.Davidson, J.Defever, B.Eaton, R.Ellson, Y.Feng, L.P.Ghislain, J.M.Glownia, G.Han, J.Hattne, J.Hellmich, A.Heroux, M.Ibrahim, J.Kern, A.Kuczewski, H.T.Lemke, P.Liu, L.Majlof, W.M.Mcclintock, S.Myers, S.Nelsen, J.Olechno, A.M.Orville, N.K.Sauter, A.S.Soares, M.S.Soltis, H.Song, R.G.Stearns, R.Tran, Y.Tsai, M.Uervirojnangkoorn, C.M.Wilmot, V.Yachandra, J.Yano, E.T.Yukl, D.Zhu, A.Zouni, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.51 / 2.13
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.504, 78.504, 37.618, 90.00, 90.00, 90.00
R / Rfree (%) 24.2 / 33.3

Other elements in 5f81:

The structure of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography (pdb code 5f81). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography, PDB code: 5f81:

Sodium binding site 1 out of 1 in 5f81

Go back to Sodium Binding Sites List in 5f81
Sodium binding site 1 out of 1 in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:32.3
occ:1.00
 OG A:SER72 2.7 32.1 1.0
OD1 A:ASN65 2.8 20.5 1.0
O A:SER72 3.2 31.4 1.0
CB A:SER72 3.4 32.7 1.0
CB A:ASN74 3.5 24.4 1.0
CG A:ASN65 3.6 20.6 1.0
CB A:ASN65 3.6 18.3 1.0
C A:SER72 3.7 32.0 1.0
N A:ASN74 3.7 27.9 1.0
C A:ARG73 3.8 30.4 1.0
CA A:ASN74 4.0 26.2 1.0
O A:ARG73 4.0 34.5 1.0
CA A:ASN65 4.0 17.6 1.0
O A:HOH357 4.1 22.5 1.0
CA A:SER72 4.2 32.4 1.0
CG A:ASN74 4.4 24.3 1.0
O A:CYS64 4.4 15.8 1.0
N A:ARG73 4.4 33.5 1.0
CA A:ARG73 4.5 32.8 1.0
N A:ASN65 4.6 16.0 1.0
O A:HOH345 4.7 7.7 1.0
C A:CYS64 4.8 16.2 1.0
ND2 A:ASN65 4.9 21.8 1.0
ND2 A:ASN74 4.9 23.7 1.0

Reference:

C.G.Roessler, R.Agarwal, M.Allaire, R.Alonso-Mori, B.Andi, J.F.Bachega, M.Bommer, A.S.Brewster, M.C.Browne, R.Chatterjee, E.Cho, A.E.Cohen, M.Cowan, S.Datwani, V.L.Davidson, J.Defever, B.Eaton, R.Ellson, Y.Feng, L.P.Ghislain, J.M.Glownia, G.Han, J.Hattne, J.Hellmich, A.Heroux, M.Ibrahim, J.Kern, A.Kuczewski, H.T.Lemke, P.Liu, L.Majlof, W.M.Mcclintock, S.Myers, S.Nelsen, J.Olechno, A.M.Orville, N.K.Sauter, A.S.Soares, S.M.Soltis, H.Song, R.G.Stearns, R.Tran, Y.Tsai, M.Uervirojnangkoorn, C.M.Wilmot, V.Yachandra, J.Yano, E.T.Yukl, D.Zhu, A.Zouni. Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography. Structure V. 24 631 2016.
ISSN: ISSN 0969-2126
PubMed: 26996959
DOI: 10.1016/J.STR.2016.02.007
Page generated: Mon Oct 7 20:58:00 2024

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