Sodium in PDB 5f14: Structure of Native Hen Egg-White Lysozyme

All present enzymatic activity of Structure of Native Hen Egg-White Lysozyme:
3.2.1.17;

The structure of Structure of Native Hen Egg-White Lysozyme, PDB code: 5f14 was solved by C.Mcglone, J.C.Nix, R.C.Page, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.73 / 1.15
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.814, 78.814, 37.292, 90.00, 90.00, 90.00
R / Rfree (%)	16.6 / 18.2

The structure of Structure of Native Hen Egg-White Lysozyme also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Sodium atom in the Structure of Native Hen Egg-White Lysozyme (pdb code 5f14). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Native Hen Egg-White Lysozyme, PDB code: 5f14:

Sodium binding site 1 out of 1 in the Structure of Native Hen Egg-White Lysozyme


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Native Hen Egg-White Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:30.7 occ:1.00 O A:SER60 2.2 16.7 1.0 O A:HOH433 2.2 20.8 1.0 O A:HOH410 2.3 13.2 1.0 OG A:SER72 2.4 21.7 1.0 O A:ARG73 2.5 58.4 1.0 O A:CYS64 2.6 11.6 1.0 CB A:SER72 3.0 47.4 1.0 C A:SER60 3.4 12.7 1.0 C A:ARG73 3.5 74.6 1.0 C A:CYS64 3.7 11.1 1.0 N A:ARG73 3.9 33.1 1.0 C A:SER72 4.0 45.1 1.0 CA A:SER60 4.0 10.6 1.0 CA A:ASN65 4.1 10.6 1.0 CA A:SER72 4.2 36.5 1.0 CB A:SER60 4.2 9.6 1.0 O A:HOH438 4.3 51.7 1.0 CA A:ARG73 4.3 21.7 1.0 N A:ASN65 4.4 11.7 1.0 N A:ASN74 4.4 17.0 1.0 N A:ARG61 4.4 14.2 1.0 CB A:THR69 4.5 11.9 1.0 C A:ARG61 4.5 21.6 1.0 O A:ARG61 4.6 17.3 1.0 O A:SER72 4.6 34.2 1.0 N A:CYS64 4.6 11.4 1.0 CA A:ARG61 4.7 18.2 1.0 CL A:CL203 4.7 19.2 1.0 O A:THR69 4.7 16.3 1.0 CA A:ASN74 4.7 14.0 1.0 N A:ASP66 4.7 9.8 1.0 N A:TRP62 4.8 13.3 1.0 OD1 A:ASN65 4.8 17.2 1.0 CA A:CYS64 4.8 10.1 1.0 CB A:ASN74 4.9 14.5 1.0 OG1 A:THR69 4.9 11.5 1.0 C A:ASN65 4.9 9.9 1.0 CG2 A:THR69 5.0 13.8 1.0 OG A:SER60 5.0 9.2 1.0 CB A:ASN65 5.0 13.2 1.0

M.Lucius, R.Falatach, C.Mcglone, K.Makaroff, A.Danielson, C.Williams, J.C.Nix, D.Konkolewicz, R.C.Page, J.A.Berberich. Investigating the Impact of Polymer Functional Groups on the Stability and Activity of Lysozyme-Polymer Conjugates. Biomacromolecules V. 17 1123 2016.
ISSN: ESSN 1526-4602
PubMed: 26866284
DOI: 10.1021/ACS.BIOMAC.5B01743