Sodium in PDB 5f11: Crystal Structure of Fructokinase From Vibrio Cholerae O395 in Fructose Bound Form

All present enzymatic activity of Crystal Structure of Fructokinase From Vibrio Cholerae O395 in Fructose Bound Form:
2.7.1.4;

The structure of Crystal Structure of Fructokinase From Vibrio Cholerae O395 in Fructose Bound Form, PDB code: 5f11 was solved by R.Paul, S.Nath, U.Sen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.67 / 2.30
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	117.533, 64.897, 41.953, 90.00, 90.00, 90.00
R / Rfree (%)	18.7 / 25.8

The binding sites of Sodium atom in the Crystal Structure of Fructokinase From Vibrio Cholerae O395 in Fructose Bound Form (pdb code 5f11). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Fructokinase From Vibrio Cholerae O395 in Fructose Bound Form, PDB code: 5f11:

Sodium binding site 1 out of 1 in the Crystal Structure of Fructokinase From Vibrio Cholerae O395 in Fructose Bound Form


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Fructokinase From Vibrio Cholerae O395 in Fructose Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:33.4 occ:1.00 O A:GLY307 2.6 27.1 1.0 O A:ALA302 2.7 25.9 1.0 O A:GLN305 2.7 30.4 1.0 O A:HOH566 3.0 24.4 1.0 O A:THR262 3.2 35.2 1.0 C A:GLY307 3.4 29.8 1.0 O A:ASP260 3.4 28.6 1.0 OD1 A:ASP260 3.5 36.3 1.0 C A:ALA302 3.9 28.0 1.0 C A:GLN305 3.9 34.0 1.0 N A:ALA308 4.0 27.9 1.0 CA A:ALA308 4.0 25.1 1.0 N A:GLY307 4.0 32.1 1.0 CG A:ASP260 4.1 38.4 1.0 CB A:ASP260 4.1 31.3 1.0 C A:LYS306 4.3 32.5 1.0 O A:ALA308 4.3 23.3 1.0 C A:ALA308 4.3 23.9 1.0 CA A:GLY307 4.3 28.6 1.0 C A:ASP260 4.3 30.0 1.0 C A:THR262 4.3 35.4 1.0 CA A:THR303 4.4 32.6 1.0 N A:THR303 4.6 26.6 1.0 CA A:LYS306 4.6 33.9 1.0 N A:THR262 4.7 27.7 1.0 O A:LYS306 4.7 30.8 1.0 N A:LYS306 4.7 36.4 1.0 CB A:THR262 4.8 34.5 1.0 N A:GLN305 4.8 30.4 1.0 CA A:THR262 4.8 37.4 1.0 C A:THR303 4.8 31.5 1.0 CA A:ASP260 4.9 33.3 1.0 CA A:ALA302 4.9 29.5 1.0 CA A:GLN305 5.0 31.0 1.0

R.Paul, S.Nath, U.Sen. Crystal Structure of Fructokinase From Vibrio Cholerae O395 in Apo Form To Be Published.