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Sodium in PDB 5f0g: Structure of the Glutathione Transferase Delta 2 From Drosophila Melanogaster

Enzymatic activity of Structure of the Glutathione Transferase Delta 2 From Drosophila Melanogaster

All present enzymatic activity of Structure of the Glutathione Transferase Delta 2 From Drosophila Melanogaster:
2.5.1.18;

Protein crystallography data

The structure of Structure of the Glutathione Transferase Delta 2 From Drosophila Melanogaster, PDB code: 5f0g was solved by D.Gonzalez, L.Briand, F.Neiers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.95 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.500, 87.500, 53.200, 90.00, 113.90, 90.00
R / Rfree (%) 17.2 / 21.7

Other elements in 5f0g:

The structure of Structure of the Glutathione Transferase Delta 2 From Drosophila Melanogaster also contains other interesting chemical elements:

Potassium (K) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of the Glutathione Transferase Delta 2 From Drosophila Melanogaster (pdb code 5f0g). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Glutathione Transferase Delta 2 From Drosophila Melanogaster, PDB code: 5f0g:

Sodium binding site 1 out of 1 in 5f0g

Go back to Sodium Binding Sites List in 5f0g
Sodium binding site 1 out of 1 in the Structure of the Glutathione Transferase Delta 2 From Drosophila Melanogaster


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Glutathione Transferase Delta 2 From Drosophila Melanogaster within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na301

b:22.0
occ:1.00
 O B:PRO53 2.7 14.9 1.0
N B:GLU64 2.9 12.9 1.0
O B:HOH444 2.9 29.1 1.0
O B:HOH497 3.0 19.4 1.0
CA B:GLU64 3.4 11.2 1.0
OG1 B:THR51 3.5 23.7 1.0
C B:ILE52 3.5 16.6 1.0
N B:PRO53 3.5 14.4 1.0
O B:ILE52 3.6 16.6 1.0
CB B:TRP63 3.7 13.5 1.0
C B:PRO53 3.7 15.2 1.0
CD B:PRO53 3.8 17.2 1.0
CB B:THR51 4.0 14.5 1.0
C B:TRP63 4.0 14.3 1.0
N B:SER65 4.1 14.1 1.0
C B:GLU64 4.1 14.8 1.0
CA B:TRP63 4.2 13.3 1.0
N B:ILE52 4.2 17.1 1.0
CA B:ILE52 4.2 15.0 1.0
CA B:PRO53 4.2 12.9 1.0
C B:THR51 4.2 15.7 1.0
CG B:PRO53 4.2 16.1 1.0
O B:THR51 4.4 19.7 1.0
CD1 B:TRP63 4.4 15.0 1.0
O B:HOH618 4.4 40.9 1.0
O B:HOH541 4.4 31.8 1.0
CG B:TRP63 4.5 13.9 1.0
CB B:GLU64 4.7 12.6 1.0
CA B:THR51 4.8 14.3 1.0
CG B:GLU64 4.9 10.9 1.0
CB B:PRO53 4.9 13.1 1.0
N B:THR54 4.9 13.6 1.0
CD B:GLU64 4.9 14.1 1.0

Reference:

D.Gonzalez, S.Fraichard, P.Grassein, P.Delarue, P.Senet, A.Nicolai, E.Chavanne, E.Mucher, Y.Artur, J.F.Ferveur, J.M.Heydel, L.Briand, F.Neiers. Characterization of A Drosophila Glutathione Transferase Involved in Isothiocyanate Detoxification. Insect Biochem. Mol. Biol. V. 95 33 2018.
ISSN: ISSN 1879-0240
PubMed: 29578047
DOI: 10.1016/J.IBMB.2018.03.004
Page generated: Mon Oct 7 20:57:17 2024

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