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Sodium in PDB 5evj: X-Ray Crystal Structure of Crarsm, An Arsenic (III) S- Adenosylmethionine Methyltransferase From Chlamydomonas Reinhardtii

Protein crystallography data

The structure of X-Ray Crystal Structure of Crarsm, An Arsenic (III) S- Adenosylmethionine Methyltransferase From Chlamydomonas Reinhardtii, PDB code: 5evj was solved by C.Packianathan, P.Kandavelu, B.Sankaran, B.P.Rosen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.58 / 2.40
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 157.885, 157.885, 95.452, 90.00, 90.00, 120.00
R / Rfree (%) 18 / 23

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Crystal Structure of Crarsm, An Arsenic (III) S- Adenosylmethionine Methyltransferase From Chlamydomonas Reinhardtii (pdb code 5evj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Crystal Structure of Crarsm, An Arsenic (III) S- Adenosylmethionine Methyltransferase From Chlamydomonas Reinhardtii, PDB code: 5evj:

Sodium binding site 1 out of 1 in 5evj

Go back to Sodium Binding Sites List in 5evj
Sodium binding site 1 out of 1 in the X-Ray Crystal Structure of Crarsm, An Arsenic (III) S- Adenosylmethionine Methyltransferase From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Crystal Structure of Crarsm, An Arsenic (III) S- Adenosylmethionine Methyltransferase From Chlamydomonas Reinhardtii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na401

b:29.0
occ:1.00
O A:HOH504 3.0 40.3 1.0
O A:HOH633 3.0 43.1 1.0
N A:HIS302 3.4 27.8 1.0
CA A:HIS300 3.5 31.4 1.0
CB A:HIS302 3.6 27.1 1.0
C A:HIS300 3.7 30.7 1.0
N A:SER301 3.7 30.0 1.0
N A:ALA303 3.7 32.5 1.0
O A:ALA303 3.7 26.1 1.0
CD2 A:HIS302 3.9 30.0 1.0
CA A:HIS302 4.0 32.9 1.0
O A:HOH579 4.0 29.9 1.0
O A:GLY299 4.0 29.2 1.0
CG A:HIS302 4.1 32.5 1.0
C A:HIS302 4.3 34.9 1.0
O A:HIS300 4.4 28.4 1.0
N A:HIS300 4.4 28.4 1.0
CB A:HIS300 4.4 30.3 1.0
C A:SER301 4.5 26.5 1.0
CA A:ALA303 4.5 31.2 1.0
C A:ALA303 4.6 30.8 1.0
C A:GLY299 4.6 30.6 1.0
CA A:SER301 4.6 31.7 1.0
ND1 A:HIS300 4.6 36.2 1.0
CB A:ALA303 4.7 25.1 1.0
OG A:SER301 4.8 32.7 1.0
CG A:HIS300 4.9 35.0 1.0

Reference:

C.Packianathan, P.Kandavelu, B.Sankaran, B.P.Rosen. Crystal Structure of Crarsm, An Arsenic (III) S-Adenosylmethionine Methyltransferase From Chlamydomonas Reinhardtii To Be Published.
Page generated: Tue Dec 15 10:57:30 2020

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