Sodium »
PDB 5en3-5f00 »
5epu »
Sodium in PDB 5epu: X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Cytosine at 1.06A.
Enzymatic activity of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Cytosine at 1.06A.
All present enzymatic activity of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Cytosine at 1.06A.:
2.4.2.3;
2.4.2.3;
Protein crystallography data
The structure of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Cytosine at 1.06A., PDB code: 5epu
was solved by
I.I.Prokofev,
A.A.Lashkov,
A.G.Gabdoulkhakov,
C.Betzel,
A.M.Mikhailov,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 46.46 / 1.06 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 92.848, 96.715, 92.890, 90.00, 119.96, 90.00 |
| R / Rfree (%) | 10.5 / 12.2 |
Other elements in 5epu:
The structure of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Cytosine at 1.06A. also contains other interesting chemical elements:
| Magnesium | (Mg) | 7 atoms |
| Chlorine | (Cl) | 2 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Cytosine at 1.06A.
(pdb code 5epu). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Cytosine at 1.06A., PDB code: 5epu:
Jump to Sodium binding site number: 1; 2; 3;
In total 3 binding sites of Sodium where determined in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Cytosine at 1.06A., PDB code: 5epu:
Jump to Sodium binding site number: 1; 2; 3;
Sodium binding site 1 out of 3 in 5epu
Go back to
Sodium Binding Sites List in 5epu
Sodium binding site 1 out
of 3 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Cytosine at 1.06A.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Cytosine at 1.06A. within 5.0Å range:
|
Sodium binding site 2 out of 3 in 5epu
Go back to
Sodium Binding Sites List in 5epu
Sodium binding site 2 out
of 3 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Cytosine at 1.06A.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Cytosine at 1.06A. within 5.0Å range:
|
Sodium binding site 3 out of 3 in 5epu
Go back to
Sodium Binding Sites List in 5epu
Sodium binding site 3 out
of 3 in the X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Cytosine at 1.06A.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 3 of X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Cytosine at 1.06A. within 5.0Å range:
|
Reference:
I.I.Prokofev,
A.A.Lashkov,
A.G.Gabdoulkhakov,
C.Betzel,
A.M.Mikhailov.
X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Cytosine at 1.06A. To Be Published.
Page generated: Mon Oct 7 20:50:41 2024
Last articles
Zn in 9JYWZn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
