Sodium in PDB 5epe: Crystal Structure of Sam-Dependent Methyltransferase From Thiobacillus Denitrificans in Complex with S-Adenosyl-L-Homocysteine

The structure of Crystal Structure of Sam-Dependent Methyltransferase From Thiobacillus Denitrificans in Complex with S-Adenosyl-L-Homocysteine, PDB code: 5epe was solved by C.Larowe, I.G.Shabalin, J.Kutner, K.B.Handing, M.Stead, B.S.Hillerich, M.Ahmed, R.Seidel, J.Bonanno, S.C.Almo, W.Minor, New York Structuralgenomics Research Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.90
Space group	F 2 3
Cell size a, b, c (Å), α, β, γ (°)	157.536, 157.536, 157.536, 90.00, 90.00, 90.00
R / Rfree (%)	13.6 / 16.7

The binding sites of Sodium atom in the Crystal Structure of Sam-Dependent Methyltransferase From Thiobacillus Denitrificans in Complex with S-Adenosyl-L-Homocysteine (pdb code 5epe). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Sam-Dependent Methyltransferase From Thiobacillus Denitrificans in Complex with S-Adenosyl-L-Homocysteine, PDB code: 5epe:

Sodium binding site 1 out of 1 in the Crystal Structure of Sam-Dependent Methyltransferase From Thiobacillus Denitrificans in Complex with S-Adenosyl-L-Homocysteine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Sam-Dependent Methyltransferase From Thiobacillus Denitrificans in Complex with S-Adenosyl-L-Homocysteine within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:36.2 occ:1.00 O A:HOH583 2.4 35.9 0.3 O A:HOH601 2.4 46.6 0.5 OD2 A:ASP188 2.6 27.5 1.0 CG A:ASP188 3.6 22.3 1.0 CB A:ASP188 3.8 18.7 1.0 O A:HOH517 4.5 27.1 1.0 O A:HOH525 4.5 49.0 1.0 OD1 A:ASP188 4.7 23.3 1.0 NZ A:LYS24 4.8 23.2 1.0

C.Larowe, I.G.Shabalin, J.Kutner, K.B.Handing, W.Minor. Crystal Structure of Sam-Dependent Methyltransferase From Thiobacillus Denitrificans in Complex with S-Adenosyl-L-Homocysteine To Be Published.