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Sodium in PDB 5cvk: Structure of XOO1075, A Peptide Deformyase From Xanthomonas Oryzae Pv. Oryze, in Complex with Fragment 493
Enzymatic activity of Structure of XOO1075, A Peptide Deformyase From Xanthomonas Oryzae Pv. Oryze, in Complex with Fragment 493
All present enzymatic activity of Structure of XOO1075, A Peptide Deformyase From Xanthomonas Oryzae Pv. Oryze, in Complex with Fragment 493:
3.5.1.88;
3.5.1.88;
Protein crystallography data
The structure of Structure of XOO1075, A Peptide Deformyase From Xanthomonas Oryzae Pv. Oryze, in Complex with Fragment 493, PDB code: 5cvk
was solved by
H.P.T.Ngo,
L.W.Kang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 26.95 / 2.10 |
| Space group | P 61 2 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 59.002, 59.002, 264.653, 90.00, 90.00, 120.00 |
| R / Rfree (%) | 17.6 / 22.4 |
Other elements in 5cvk:
The structure of Structure of XOO1075, A Peptide Deformyase From Xanthomonas Oryzae Pv. Oryze, in Complex with Fragment 493 also contains other interesting chemical elements:
| Cadmium | (Cd) | 5 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the Structure of XOO1075, A Peptide Deformyase From Xanthomonas Oryzae Pv. Oryze, in Complex with Fragment 493
(pdb code 5cvk). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of XOO1075, A Peptide Deformyase From Xanthomonas Oryzae Pv. Oryze, in Complex with Fragment 493, PDB code: 5cvk:
In total only one binding site of Sodium was determined in the Structure of XOO1075, A Peptide Deformyase From Xanthomonas Oryzae Pv. Oryze, in Complex with Fragment 493, PDB code: 5cvk:
Sodium binding site 1 out of 1 in 5cvk
Go back to
Sodium Binding Sites List in 5cvk
Sodium binding site 1 out
of 1 in the Structure of XOO1075, A Peptide Deformyase From Xanthomonas Oryzae Pv. Oryze, in Complex with Fragment 493
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Structure of XOO1075, A Peptide Deformyase From Xanthomonas Oryzae Pv. Oryze, in Complex with Fragment 493 within 5.0Å range:
|
Reference:
H.P.T.Ngo,
L.W.Kang.
Structure of XOO1075, A Peptide Deformyase From Xanthomonas Oryzae Pv.Oryze, in Complex with Fragment 493 To Be Published.
Page generated: Tue Dec 15 10:46:47 2020
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