Sodium in PDB 5cp0: Mas Complex Structure of Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae

Enzymatic activity of Mas Complex Structure of Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae

All present enzymatic activity of Mas Complex Structure of Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae:
3.5.1.88;

Protein crystallography data

The structure of Mas Complex Structure of Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, PDB code: 5cp0 was solved by H.P.T.Ngo, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	29.37 / 2.00
*Space group*	P 6₁ 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	58.736, 58.736, 265.360, 90.00, 90.00, 120.00
*R / R_free (%)*	18.1 / 21.7

Other elements in 5cp0:

The structure of Mas Complex Structure of Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae also contains other interesting chemical elements:

Cadmium

(Cd)

5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Mas Complex Structure of Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae (pdb code 5cp0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Mas Complex Structure of Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, PDB code: 5cp0:

Sodium binding site 1 out of 1 in 5cp0

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Sodium Binding Sites List in 5cp0

Sodium binding site 1 out of 1 in the Mas Complex Structure of Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mas Complex Structure of Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na209 b:32.9 occ:1.00	O	A:HOH350	2.2	28.4	1.0
	O	A:HOH428	2.3	35.5	1.0
	O	A:LEU14	2.3	26.7	1.0
	O	A:HOH448	2.4	37.7	1.0
	O	A:HOH469	3.3	36.7	1.0
	C	A:LEU14	3.4	23.0	1.0
	CB	A:LEU14	3.9	23.6	1.0
	CA	A:LEU14	4.1	20.6	1.0
	O	A:GLY148	4.2	24.9	1.0
	N	A:ARG15	4.5	22.4	1.0
	CA	A:GLY148	4.7	21.1	1.0
	C	A:GLY148	4.9	25.7	1.0
	O	A:VAL147	4.9	23.0	1.0
	CA	A:ARG15	4.9	26.1	1.0

Reference:

H.P.T.Ngo, L.W.Kang. Mas Complex Structure of Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae To Be Published.

Page generated: Mon Oct 7 20:24:37 2024

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