Sodium in PDB 5com: Crystal Structure of Uncharacterized Protein Q187F5 From Clostridium Difficile 630

The structure of Crystal Structure of Uncharacterized Protein Q187F5 From Clostridium Difficile 630, PDB code: 5com was solved by J.D.Taylor, G.Taylor, S.J.Matthews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	61.74 / 1.85
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	127.050, 50.300, 91.720, 90.00, 118.70, 90.00
R / Rfree (%)	17.1 / 19.4

The binding sites of Sodium atom in the Crystal Structure of Uncharacterized Protein Q187F5 From Clostridium Difficile 630 (pdb code 5com). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Uncharacterized Protein Q187F5 From Clostridium Difficile 630, PDB code: 5com:

Sodium binding site 1 out of 1 in the Crystal Structure of Uncharacterized Protein Q187F5 From Clostridium Difficile 630


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Uncharacterized Protein Q187F5 From Clostridium Difficile 630 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na201 b:45.2 occ:1.00 O B:ASP146 2.3 30.7 1.0 O B:THR149 2.6 37.5 1.0 OG1 B:THR149 2.7 33.9 1.0 O B:HOH441 2.8 43.6 1.0 C B:THR149 3.4 38.0 1.0 C B:ASP146 3.4 32.4 1.0 CB B:THR149 3.9 33.9 1.0 O B:HOH317 3.9 49.5 1.0 CA B:THR149 4.0 37.0 1.0 N B:THR149 4.0 38.0 1.0 O B:ALA152 4.1 25.8 1.0 CA B:ASP146 4.1 29.8 1.0 O B:HOH329 4.1 25.8 1.0 O B:LYS150 4.2 45.3 1.0 N B:LYS150 4.3 40.1 1.0 C B:LYS150 4.4 42.2 1.0 N B:ASP147 4.5 35.7 1.0 CA B:LYS150 4.6 43.3 1.0 CA B:ASP147 4.6 38.7 0.5 CB B:ASP146 4.6 31.0 1.0 CA B:ASP147 4.6 38.7 0.5 C B:ASP147 4.9 34.9 1.0

J.D.Taylor, G.Taylor, S.A.Hare, S.J.Matthews. Structures of the Dfsb Protein Family Suggest A Cationic, Helical Sibling Lethal Factor Peptide. J.Mol.Biol. V. 428 554 2016.
ISSN: ESSN 1089-8638
PubMed: 26804569
DOI: 10.1016/J.JMB.2016.01.013