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Sodium in PDB 5ckf: E. Coli Mazf E24A Form I

Protein crystallography data

The structure of E. Coli Mazf E24A Form I, PDB code: 5ckf was solved by V.Zorzini, R.Loris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.63 / 2.80
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 52.816, 52.816, 191.398, 90.00, 90.00, 120.00
R / Rfree (%) 23.6 / 30

Sodium Binding Sites:

The binding sites of Sodium atom in the E. Coli Mazf E24A Form I (pdb code 5ckf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the E. Coli Mazf E24A Form I, PDB code: 5ckf:

Sodium binding site 1 out of 1 in 5ckf

Go back to Sodium Binding Sites List in 5ckf
Sodium binding site 1 out of 1 in the E. Coli Mazf E24A Form I


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of E. Coli Mazf E24A Form I within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:0.3
occ:1.00
NH2 A:ARG4 4.5 0.8 1.0
CZ A:ARG4 4.7 0.9 1.0
NH1 A:ARG4 4.9 0.9 1.0

Reference:

V.Zorzini, A.Mernik, J.Lah, Y.G.Sterckx, N.De Jonge, A.Garcia-Pino, H.De Greve, W.Versees, R.Loris. Substrate Recognition and Activity Regulation of the Escherichia Coli Mrna Endonuclease Mazf. J.Biol.Chem. V. 291 10950 2016.
ISSN: ESSN 1083-351X
PubMed: 27026704
DOI: 10.1074/JBC.M116.715912
Page generated: Mon Oct 7 20:22:01 2024

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