Sodium in PDB 5ckd: E. Coli Mazf E24A Form III

The structure of E. Coli Mazf E24A Form III, PDB code: 5ckd was solved by V.Zorzini, R.Loris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.36 / 1.70
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	69.858, 32.462, 85.263, 90.00, 98.79, 90.00
R / Rfree (%)	19.7 / 24.3

The binding sites of Sodium atom in the E. Coli Mazf E24A Form III (pdb code 5ckd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the E. Coli Mazf E24A Form III, PDB code: 5ckd:

Sodium binding site 1 out of 1 in the E. Coli Mazf E24A Form III


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of E. Coli Mazf E24A Form III within 5.0Å range: probe atom residue distance (Å) B Occ B:Na201 b:45.0 occ:1.00 O B:HOH319 3.5 40.2 1.0 N B:ARG4 3.7 34.8 1.0 O B:HOH303 3.7 44.1 1.0 CB B:SER3 3.7 39.5 1.0 CA B:SER3 3.8 34.6 1.0 NE B:ARG4 4.0 56.6 1.0 NH2 B:ARG4 4.2 57.0 1.0 C B:SER3 4.3 34.8 1.0 CB B:ARG4 4.6 42.3 1.0 CZ B:ARG4 4.6 57.6 1.0 O B:VAL2 4.7 39.0 1.0 CA B:ARG4 4.7 36.2 1.0 CG B:ARG4 4.8 47.9 1.0 O B:HOH318 4.8 57.4 1.0 CD B:ARG4 5.0 54.7 1.0

V.Zorzini, A.Mernik, J.Lah, Y.G.Sterckx, N.De Jonge, A.Garcia-Pino, H.De Greve, W.Versees, R.Loris. Substrate Recognition and Activity Regulation of the Escherichia Coli Mrna Endonuclease Mazf. J.Biol.Chem. V. 291 10950 2016.
ISSN: ESSN 1083-351X
PubMed: 27026704
DOI: 10.1074/JBC.M116.715912