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Sodium in PDB 5chm: Crystal Structure of Fox-4 Cephamycinase Complexed with Ceftazidime Batsi (LP06)

Enzymatic activity of Crystal Structure of Fox-4 Cephamycinase Complexed with Ceftazidime Batsi (LP06)

All present enzymatic activity of Crystal Structure of Fox-4 Cephamycinase Complexed with Ceftazidime Batsi (LP06):
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of Fox-4 Cephamycinase Complexed with Ceftazidime Batsi (LP06), PDB code: 5chm was solved by V.N.Malashkevich, R.Toro, S.Lefurgy, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.96 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.803, 57.144, 56.123, 90.00, 95.98, 90.00
R / Rfree (%) 17 / 22.9

Other elements in 5chm:

The structure of Crystal Structure of Fox-4 Cephamycinase Complexed with Ceftazidime Batsi (LP06) also contains other interesting chemical elements:

Zinc (Zn) 5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Fox-4 Cephamycinase Complexed with Ceftazidime Batsi (LP06) (pdb code 5chm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Fox-4 Cephamycinase Complexed with Ceftazidime Batsi (LP06), PDB code: 5chm:

Sodium binding site 1 out of 1 in 5chm

Go back to Sodium Binding Sites List in 5chm
Sodium binding site 1 out of 1 in the Crystal Structure of Fox-4 Cephamycinase Complexed with Ceftazidime Batsi (LP06)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Fox-4 Cephamycinase Complexed with Ceftazidime Batsi (LP06) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na406

b:30.0
occ:1.00
 O A:HOH604 2.2 30.0 1.0
OE2 A:GLU361 2.2 92.9 1.0
CD A:GLU361 3.1 93.4 1.0
OE1 A:GLU361 3.3 89.0 1.0
OXT A:GLU361 4.4 0.5 1.0
CG A:GLU361 4.5 95.1 1.0
O A:HOH501 4.6 42.8 1.0
CA A:GLU361 4.8 96.7 1.0
C A:GLU361 5.0 0.6 1.0

Reference:

V.N.Malashkevich, R.Toro, S.Lefurgy, S.C.Almo. Crystal Structure of Fox-4 Cephamycinase Complexed with Ceftazidime Batsi (LP06) To Be Published.
Page generated: Tue Dec 15 10:43:12 2020

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