Sodium in PDB 5ceg: X-Ray Structure of Toxin/Anti-Toxin Complex From Mesorhizobium Opportunistum

The structure of X-Ray Structure of Toxin/Anti-Toxin Complex From Mesorhizobium Opportunistum, PDB code: 5ceg was solved by C.D.Aakre, J.Herrou, S.Crosson, M.T.Laub, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.71 / 1.59
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	43.180, 118.840, 211.420, 90.00, 90.00, 90.00
R / Rfree (%)	16.9 / 19.5

The structure of X-Ray Structure of Toxin/Anti-Toxin Complex From Mesorhizobium Opportunistum also contains other interesting chemical elements:

Iodine

(I)

8 atoms

The binding sites of Sodium atom in the X-Ray Structure of Toxin/Anti-Toxin Complex From Mesorhizobium Opportunistum (pdb code 5ceg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of Toxin/Anti-Toxin Complex From Mesorhizobium Opportunistum, PDB code: 5ceg:

Sodium binding site 1 out of 1 in the X-Ray Structure of Toxin/Anti-Toxin Complex From Mesorhizobium Opportunistum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of Toxin/Anti-Toxin Complex From Mesorhizobium Opportunistum within 5.0Å range: probe atom residue distance (Å) B Occ B:Na203 b:12.9 occ:1.00 O B:LEU99 2.3 13.3 1.0 O B:HOH341 2.4 13.3 1.0 O B:LEU102 2.5 14.2 1.0 O B:PHE103 2.5 10.4 0.6 O B:GLY95 2.5 13.0 1.0 C B:PHE103 3.0 13.5 0.6 C B:PHE103 3.1 13.8 0.4 O B:PHE103 3.5 8.9 0.4 C B:LEU99 3.5 13.6 1.0 C B:GLY95 3.5 14.4 1.0 C B:LEU102 3.6 15.0 1.0 CA B:ARG96 3.8 11.1 1.0 CA B:PHE103 3.9 13.8 0.6 CA B:PHE103 4.0 13.7 0.4 N B:ARG96 4.1 12.3 1.0 CB B:PHE103 4.1 16.2 0.6 CB B:PHE103 4.2 15.9 0.4 N B:PHE103 4.2 14.4 0.6 N B:PHE103 4.2 14.4 0.4 CA B:LEU99 4.2 10.1 1.0 C B:ARG96 4.2 14.4 1.0 O B:ARG96 4.2 13.0 1.0 N B:LEU99 4.3 11.8 1.0 CB B:LEU99 4.4 10.7 1.0 NZ A:LYS45 4.4 11.2 1.0 NH1 D:ARG101 4.4 24.4 1.0 O B:ASN100 4.5 21.2 1.0 N B:ASN100 4.5 12.3 1.0 CA B:GLY95 4.6 13.2 1.0 C B:ASN100 4.7 16.5 1.0 N B:LEU102 4.7 14.6 1.0 CA B:ASN100 4.8 12.7 1.0 CA B:LEU102 4.8 15.5 1.0

C.D.Aakre, J.Herrou, T.N.Phung, B.S.Perchuk, S.Crosson, M.T.Laub. Evolving New Protein-Protein Interaction Specificity Through Promiscuous Intermediates. Cell V. 163 594 2015.
ISSN: ISSN 1097-4172
PubMed: 26478181
DOI: 10.1016/J.CELL.2015.09.055