Sodium in PDB 4zky: Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis

Enzymatic activity of Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis

All present enzymatic activity of Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis:
1.4.3.5;

Protein crystallography data

The structure of Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis, PDB code: 4zky was solved by B.M.Lee, P.D.Carr, F.H.Ahmed, C.J.Jackson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.40 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.704, 59.415, 95.990, 90.00, 90.00, 90.00
R / Rfree (%) 22.2 / 25.9

Other elements in 4zky:

The structure of Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis also contains other interesting chemical elements:

Iodine (I) 1 atom
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis (pdb code 4zky). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis, PDB code: 4zky:

Sodium binding site 1 out of 1 in 4zky

Go back to Sodium Binding Sites List in 4zky
Sodium binding site 1 out of 1 in the Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of F420 Binding Protein, MSMEG_6526, From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na201

b:41.6
occ:1.00
 CL A:CL202 2.6 21.1 1.0
NH2 B:ARG92 2.8 35.9 1.0
CB B:ALA138 3.6 22.7 1.0
CZ B:ARG92 3.8 30.3 1.0
NH2 A:ARG63 3.9 45.6 1.0
NH1 B:ARG92 4.1 34.2 1.0
CH2 B:TRP90 4.6 26.6 1.0
NE A:ARG63 4.6 41.9 1.0
CZ A:ARG63 4.7 40.5 1.0
O B:HOH380 4.8 40.5 1.0
NE2 A:HIS28 4.8 32.6 1.0
O B:HOH352 4.8 24.1 1.0
NE B:ARG92 5.0 24.7 1.0
CA B:ALA138 5.0 20.2 1.0

Reference:

F.H.Ahmed, P.D.Carr, B.M.Lee, L.Afriat-Jurnou, A.E.Mohamed, N.S.Hong, J.Flanagan, M.C.Taylor, C.Greening, C.J.Jackson. Sequence-Structure-Function Classification of A Catalytically Diverse Oxidoreductase Superfamily in Mycobacteria. J.Mol.Biol. V. 427 3554 2015.
ISSN: ESSN 1089-8638
PubMed: 26434506
DOI: 10.1016/J.JMB.2015.09.021
Page generated: Tue Dec 15 10:09:38 2020

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