Sodium in PDB 4zb6: Crystal Structure of Glutathione Transferase URE2P4 From Phanerochaete Chrysosporium in Complex with Oxidized Glutathione.

The structure of Crystal Structure of Glutathione Transferase URE2P4 From Phanerochaete Chrysosporium in Complex with Oxidized Glutathione., PDB code: 4zb6 was solved by T.Roret, C.Didierjean, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.00 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	92.437, 94.059, 104.627, 90.00, 90.00, 90.00
R / Rfree (%)	16.3 / 19

The binding sites of Sodium atom in the Crystal Structure of Glutathione Transferase URE2P4 From Phanerochaete Chrysosporium in Complex with Oxidized Glutathione. (pdb code 4zb6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Crystal Structure of Glutathione Transferase URE2P4 From Phanerochaete Chrysosporium in Complex with Oxidized Glutathione., PDB code: 4zb6:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Crystal Structure of Glutathione Transferase URE2P4 From Phanerochaete Chrysosporium in Complex with Oxidized Glutathione.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Glutathione Transferase URE2P4 From Phanerochaete Chrysosporium in Complex with Oxidized Glutathione. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:9.7 occ:1.00 O A:HOH409 3.2 30.4 1.0 N A:GLY19 3.4 11.2 1.0 N A:ASN18 3.4 14.0 1.0 SG5 A:GDS300 3.4 12.8 1.0 CE1 A:HIS13 3.5 30.2 1.0 CB A:ASN18 3.7 14.9 1.0 C A:GLY16 3.7 26.5 1.0 ND2 A:ASN18 3.7 13.0 1.0 CB5 A:GDS300 3.7 11.0 1.0 CA A:GLY16 3.8 31.3 1.0 CA A:ASN18 3.8 12.0 1.0 O A:VAL59 3.8 10.8 1.0 N A:PRO17 4.0 16.8 1.0 ND1 A:HIS13 4.0 29.0 1.0 O A:GLY16 4.0 26.8 1.0 C A:ASN18 4.0 10.5 1.0 N5 A:GDS300 4.1 10.5 1.0 O A:HOH427 4.1 22.4 1.0 CG A:ASN18 4.2 13.7 1.0 CG2 A:VAL59 4.2 14.7 1.0 CD A:PRO60 4.2 11.0 1.0 C A:VAL59 4.3 10.3 1.0 CA A:GLY19 4.3 12.1 1.0 C A:PRO17 4.3 16.2 1.0 CD A:PRO17 4.4 15.6 1.0 CA5 A:GDS300 4.5 10.6 1.0 N A:PRO60 4.6 11.9 1.0 NE2 A:HIS13 4.7 32.6 1.0 CA A:PRO17 4.8 14.3 1.0 N A:GLY16 4.8 35.6 1.0 CD6 A:GDS300 4.8 12.6 1.0 CB A:VAL59 5.0 13.5 1.0

Sodium binding site 2 out of 4 in the Crystal Structure of Glutathione Transferase URE2P4 From Phanerochaete Chrysosporium in Complex with Oxidized Glutathione.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Glutathione Transferase URE2P4 From Phanerochaete Chrysosporium in Complex with Oxidized Glutathione. within 5.0Å range: probe atom residue distance (Å) B Occ B:Na301 b:8.7 occ:1.00 O B:HOH473 3.2 24.2 1.0 N B:ASN18 3.4 10.5 1.0 N B:GLY19 3.4 11.2 1.0 CE1 B:HIS13 3.4 20.1 1.0 SG5 B:GDS300 3.4 12.6 1.0 CB B:ASN18 3.7 9.9 1.0 C B:GLY16 3.7 25.1 1.0 CA B:GLY16 3.8 30.6 1.0 O B:HOH421 3.8 26.4 1.0 CB5 B:GDS300 3.8 7.7 1.0 CA B:ASN18 3.8 8.1 1.0 ND2 B:ASN18 3.8 10.2 1.0 ND1 B:HIS13 3.9 20.2 1.0 O B:VAL59 4.0 7.8 1.0 N B:PRO17 4.0 14.3 1.0 O B:GLY16 4.0 26.1 1.0 C B:ASN18 4.0 8.3 1.0 CG B:ASN18 4.2 10.3 1.0 N5 B:GDS300 4.3 10.1 1.0 CD B:PRO17 4.3 16.4 1.0 CA B:GLY19 4.3 14.4 1.0 C B:PRO17 4.4 13.1 1.0 CG2 B:VAL59 4.4 10.4 1.0 CD B:PRO60 4.4 9.8 1.0 C B:VAL59 4.5 6.6 1.0 NE2 B:HIS13 4.6 22.4 1.0 CA5 B:GDS300 4.6 9.0 1.0 N B:GLY16 4.7 36.6 1.0 CA B:PRO17 4.7 13.0 1.0 N B:PRO60 4.7 8.4 1.0 CG B:PRO17 4.8 15.2 1.0 CD6 B:GDS300 5.0 9.2 1.0

Sodium binding site 3 out of 4 in the Crystal Structure of Glutathione Transferase URE2P4 From Phanerochaete Chrysosporium in Complex with Oxidized Glutathione.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Glutathione Transferase URE2P4 From Phanerochaete Chrysosporium in Complex with Oxidized Glutathione. within 5.0Å range: probe atom residue distance (Å) B Occ C:Na301 b:11.7 occ:1.00 O C:HOH487 3.2 28.6 1.0 N C:GLY19 3.4 16.1 1.0 N C:ASN18 3.4 12.5 1.0 SG2 C:GDS300 3.4 16.7 1.0 CE1 C:HIS13 3.5 26.6 1.0 CB C:ASN18 3.7 14.8 1.0 C C:GLY16 3.7 29.6 1.0 CB2 C:GDS300 3.7 11.3 1.0 CA C:GLY16 3.8 34.5 1.0 ND2 C:ASN18 3.8 13.5 1.0 O C:VAL59 3.8 13.0 1.0 CA C:ASN18 3.8 11.8 1.0 O C:GLY16 3.9 30.2 1.0 O C:HOH404 4.0 30.1 1.0 ND1 C:HIS13 4.0 26.4 1.0 N C:PRO17 4.0 17.8 1.0 C C:ASN18 4.0 13.4 1.0 N2 C:GDS300 4.1 11.9 1.0 CG C:ASN18 4.2 14.4 1.0 CA C:GLY19 4.3 16.6 1.0 CD C:PRO17 4.3 19.8 1.0 C C:PRO17 4.4 15.8 1.0 C C:VAL59 4.4 13.5 1.0 CD C:PRO60 4.4 14.0 1.0 CG2 C:VAL59 4.4 9.2 1.0 CA2 C:GDS300 4.6 12.4 1.0 N C:PRO60 4.7 12.6 1.0 NE2 C:HIS13 4.7 29.2 1.0 CA C:PRO17 4.8 16.1 1.0 CD1 C:GDS300 4.9 10.3 1.0 CG C:PRO17 4.9 18.3 1.0 N C:GLY16 5.0 40.9 1.0

Sodium binding site 4 out of 4 in the Crystal Structure of Glutathione Transferase URE2P4 From Phanerochaete Chrysosporium in Complex with Oxidized Glutathione.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of Glutathione Transferase URE2P4 From Phanerochaete Chrysosporium in Complex with Oxidized Glutathione. within 5.0Å range: probe atom residue distance (Å) B Occ D:Na301 b:11.5 occ:1.00 O D:HOH410 3.3 24.7 1.0 N D:ASN18 3.4 11.5 1.0 N D:GLY19 3.4 11.5 1.0 SG5 D:GDS300 3.4 13.0 1.0 O D:HOH542 3.6 30.4 1.0 CB D:ASN18 3.7 12.2 1.0 O D:VAL59 3.7 10.1 1.0 CB5 D:GDS300 3.7 10.9 1.0 C D:GLY16 3.8 24.0 1.0 CA D:ASN18 3.8 11.3 1.0 O D:HOH413 3.8 16.4 1.0 ND2 D:ASN18 3.8 10.3 1.0 CA D:GLY16 3.9 27.3 1.0 N D:PRO17 4.0 14.9 1.0 C D:ASN18 4.0 11.9 1.0 CG2 D:VAL59 4.1 12.0 1.0 O D:GLY16 4.1 26.2 1.0 N5 D:GDS300 4.1 9.5 1.0 CD D:PRO60 4.2 8.9 1.0 C D:VAL59 4.2 9.8 1.0 CG D:ASN18 4.2 12.3 1.0 CD D:PRO17 4.3 11.0 1.0 C D:PRO17 4.4 14.1 1.0 CA D:GLY19 4.4 12.5 1.0 N D:PRO60 4.5 8.8 1.0 CA5 D:GDS300 4.5 8.5 1.0 O D:HIS13 4.6 28.1 1.0 CA D:PRO17 4.8 13.1 1.0 N D:GLY16 4.9 29.8 1.0 CB D:VAL59 4.9 12.2 1.0 CD6 D:GDS300 4.9 10.2 1.0

T.Roret, A.Thuillier, F.Favier, E.Gelhaye, C.Didierjean, M.Morel-Rouhier. Evolutionary Divergence of URE2PA Glutathione Transferases in Wood Degrading Fungi. Fungal Genet. Biol. V. 83 103 2015.
ISSN: ISSN 1096-0937
PubMed: 26348000
DOI: 10.1016/J.FGB.2015.09.002