Sodium in PDB 4zav: Ubix in Complex with A Covalent Adduct Between Dimethylallyl Monophosphate and Reduced Fmn

The structure of Ubix in Complex with A Covalent Adduct Between Dimethylallyl Monophosphate and Reduced Fmn, PDB code: 4zav was solved by M.D.White, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.27 / 1.40
Space group	F 2 3
Cell size a, b, c (Å), α, β, γ (°)	142.180, 142.180, 142.180, 90.00, 90.00, 90.00
R / Rfree (%)	9.8 / 12.9

The binding sites of Sodium atom in the Ubix in Complex with A Covalent Adduct Between Dimethylallyl Monophosphate and Reduced Fmn (pdb code 4zav). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Ubix in Complex with A Covalent Adduct Between Dimethylallyl Monophosphate and Reduced Fmn, PDB code: 4zav:

Sodium binding site 1 out of 1 in the Ubix in Complex with A Covalent Adduct Between Dimethylallyl Monophosphate and Reduced Fmn


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Ubix in Complex with A Covalent Adduct Between Dimethylallyl Monophosphate and Reduced Fmn within 5.0Å range: probe atom residue distance (Å) B Occ A:Na306 b:15.7 occ:0.50 O A:HOH407 2.2 96.9 1.0 O A:HOH513 2.2 21.7 1.0 O A:HOH454 2.5 17.0 1.0 OE2 A:GLU121 4.0 17.3 1.0 O A:HOH447 4.2 21.2 1.0 O A:GLY106 4.5 10.6 1.0 C A:GLY106 4.5 9.5 1.0 CA A:GLY106 4.8 11.0 1.0 O A:HOH579 4.8 17.6 1.0

M.D.White, K.A.Payne, K.Fisher, S.A.Marshall, D.Parker, N.J.Rattray, D.K.Trivedi, R.Goodacre, S.E.Rigby, N.S.Scrutton, S.Hay, D.Leys. Ubix Is A Flavin Prenyltransferase Required For Bacterial Ubiquinone Biosynthesis. Nature V. 522 497 2015.
ISSN: ESSN 1476-4687
PubMed: 26083743
DOI: 10.1038/NATURE14559