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Sodium in PDB 4z5y: The 1.56-Angstrom Crystal Structure of Copper(II)-Bound Pqqb From Pseudomonas Putida

Protein crystallography data

The structure of The 1.56-Angstrom Crystal Structure of Copper(II)-Bound Pqqb From Pseudomonas Putida, PDB code: 4z5y was solved by X.Tu, C.M.Wilmot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.30 / 1.56
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 86.202, 86.202, 106.625, 90.00, 90.00, 90.00
R / Rfree (%) 13.6 / 16.6

Other elements in 4z5y:

The structure of The 1.56-Angstrom Crystal Structure of Copper(II)-Bound Pqqb From Pseudomonas Putida also contains other interesting chemical elements:

Copper (Cu) 1 atom
Zinc (Zn) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the The 1.56-Angstrom Crystal Structure of Copper(II)-Bound Pqqb From Pseudomonas Putida (pdb code 4z5y). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The 1.56-Angstrom Crystal Structure of Copper(II)-Bound Pqqb From Pseudomonas Putida, PDB code: 4z5y:

Sodium binding site 1 out of 1 in 4z5y

Go back to Sodium Binding Sites List in 4z5y
Sodium binding site 1 out of 1 in the The 1.56-Angstrom Crystal Structure of Copper(II)-Bound Pqqb From Pseudomonas Putida


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The 1.56-Angstrom Crystal Structure of Copper(II)-Bound Pqqb From Pseudomonas Putida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:41.5
occ:0.92
OG1 A:THR190 2.7 29.1 1.0
O A:LEU303 2.7 31.4 1.0
OD2 A:ASP187 2.8 28.5 1.0
O A:LEU304 3.4 40.3 0.9
CG A:ASP187 3.4 26.7 1.0
CB A:ASP187 3.4 25.9 1.0
N A:MET0 3.4 31.7 0.9
CA A:MET0 3.5 31.7 0.9
CG2 A:THR190 3.5 29.5 1.0
C A:LEU304 3.5 40.2 0.7
N A:MET1 3.6 28.4 1.0
CB A:THR190 3.6 27.7 1.0
C A:LEU303 3.7 32.7 1.0
C A:MET0 3.8 31.2 0.9
CA A:LEU304 4.0 40.2 1.0
N A:GLU305 4.0 40.7 1.0
O A:HOH608 4.1 44.1 1.0
N A:LEU304 4.1 38.4 1.0
OD1 A:ASP187 4.5 27.1 1.0
CA A:GLY192 4.5 28.2 1.0
CB A:MET1 4.5 26.8 1.0
N A:GLY192 4.7 28.9 1.0
CD2 A:LEU303 4.7 35.3 0.6
CA A:MET1 4.7 25.9 1.0
CA A:GLU305 4.7 40.9 1.0
O A:MET0 4.8 31.7 1.0
CA A:ASP187 4.9 25.3 1.0
CA A:LEU303 4.9 30.9 1.0
CA A:THR190 4.9 27.6 1.0
CB A:MET0 5.0 33.5 1.0

Reference:

X.Tu, C.M.Wimot. Crystal Structures Reveal Metal-Binding Plasticity at the Active Site of Pqqb To Be Published.
Page generated: Tue Dec 15 10:05:37 2020

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