Sodium in PDB 4xfk: Crystal Structure of Leucine-, Isoleucine-, Valine-, Threonine-, and Alanine-Binding Protein From Brucella Ovis

The structure of Crystal Structure of Leucine-, Isoleucine-, Valine-, Threonine-, and Alanine-Binding Protein From Brucella Ovis, PDB code: 4xfk was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.42 / 1.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	62.120, 46.390, 62.400, 90.00, 101.62, 90.00
R / Rfree (%)	13.7 / 16.1

The binding sites of Sodium atom in the Crystal Structure of Leucine-, Isoleucine-, Valine-, Threonine-, and Alanine-Binding Protein From Brucella Ovis (pdb code 4xfk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Leucine-, Isoleucine-, Valine-, Threonine-, and Alanine-Binding Protein From Brucella Ovis, PDB code: 4xfk:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Leucine-, Isoleucine-, Valine-, Threonine-, and Alanine-Binding Protein From Brucella Ovis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Leucine-, Isoleucine-, Valine-, Threonine-, and Alanine-Binding Protein From Brucella Ovis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:15.0 occ:1.00 O A:HOH796 2.2 10.3 1.0 O A:HOH798 2.3 11.9 1.0 O A:GLY188 2.3 6.2 1.0 O A:GLY157 2.3 9.0 1.0 OH A:TYR103 2.4 7.9 1.0 C A:GLY188 3.1 6.3 1.0 C A:GLY157 3.4 7.4 1.0 CZ A:TYR103 3.4 6.4 1.0 CA A:GLY188 3.7 6.8 1.0 CE2 A:TYR103 3.7 6.7 1.0 CA A:SER158 3.8 7.9 1.0 CG1 A:VAL367 4.0 7.1 1.0 N A:ALA189 4.1 6.3 1.0 N A:SER158 4.1 6.7 1.0 O A:HOH794 4.1 9.4 1.0 C A:SER158 4.1 8.6 1.0 O A:SER158 4.3 11.0 1.0 CA A:GLY157 4.4 7.4 1.0 CA A:ALA189 4.4 6.4 1.0 CH3 A:ACT500 4.5 8.6 1.0 OXT A:ACT500 4.5 8.4 1.0 O A:HOH786 4.6 8.2 1.0 CE1 A:TYR103 4.6 6.3 1.0 OE2 A:GLU190 4.6 10.3 1.0 C A:ACT500 4.7 8.1 1.0 N A:SER159 4.8 8.3 1.0 CG A:GLU190 4.8 6.7 1.0 N A:GLY188 4.9 6.5 1.0 CB A:VAL367 4.9 7.1 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Leucine-, Isoleucine-, Valine-, Threonine-, and Alanine-Binding Protein From Brucella Ovis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Leucine-, Isoleucine-, Valine-, Threonine-, and Alanine-Binding Protein From Brucella Ovis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na503 b:25.0 occ:1.00 OG A:SER417 2.4 10.6 0.7 O A:HOH1098 2.4 34.5 1.0 O A:HOH827 2.5 15.6 1.0 O A:HOH1109 2.5 36.9 1.0 O A:HOH1108 2.5 36.0 1.0 O A:HOH1044 2.6 36.9 1.0 OG A:SER417 3.4 13.1 0.3 CB A:SER417 3.4 12.1 0.3 CB A:SER417 3.5 11.2 0.7 O A:HOH914 3.9 20.6 1.0 O A:HOH943 4.2 27.4 1.0 N A:SER417 4.3 9.2 1.0 O A:HOH1002 4.3 33.3 1.0 O A:HOH892 4.4 19.9 1.0 CA A:SER417 4.4 9.7 0.3 OD1 A:ASP418 4.4 16.6 1.0 CA A:SER417 4.5 9.0 0.7 O A:HOH838 4.5 16.1 1.0

J.Abendroth, J.W.Fairman, D.D.Lorimer, T.E.Edwards. Crystal Structure of Leucine-, Isoleucine-, Valine-, Threonine-, and Alanine-Binding Protein From Brucella Ovis To Be Published.