Sodium in PDB 4us7: Sulfur Sad Phased Structure of A Type IV Pilus Protein From Shewanella Oneidensis

The structure of Sulfur Sad Phased Structure of A Type IV Pilus Protein From Shewanella Oneidensis, PDB code: 4us7 was solved by M.Gorgel, A.Boeggild, J.J.Ulstrup, U.Mueller, M.Weiss, P.Nissen, T.Boesen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.275 / 1.96
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	48.830, 96.550, 109.760, 90.00, 90.00, 90.00
R / Rfree (%)	17.94 / 22.01

The binding sites of Sodium atom in the Sulfur Sad Phased Structure of A Type IV Pilus Protein From Shewanella Oneidensis (pdb code 4us7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Sulfur Sad Phased Structure of A Type IV Pilus Protein From Shewanella Oneidensis, PDB code: 4us7:

Sodium binding site 1 out of 1 in the Sulfur Sad Phased Structure of A Type IV Pilus Protein From Shewanella Oneidensis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Sulfur Sad Phased Structure of A Type IV Pilus Protein From Shewanella Oneidensis within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1091 b:34.5 occ:1.00 O B:PHE44 2.4 25.7 1.0 O B:HOH2022 2.5 49.9 1.0 O B:HOH2021 2.5 30.1 1.0 OD1 B:ASN38 2.5 29.1 1.0 O B:HOH2024 2.6 44.7 1.0 O B:LEU36 2.6 26.0 1.0 CG B:ASN38 3.3 34.1 1.0 C B:LEU36 3.6 29.6 1.0 C B:PHE44 3.6 24.9 1.0 ND2 B:ASN38 3.6 31.9 1.0 N B:PHE44 4.0 20.4 1.0 N B:LEU36 4.0 24.5 1.0 CA B:LEU36 4.1 25.6 1.0 CB B:LEU36 4.1 19.5 1.0 CA B:PHE44 4.2 17.6 1.0 O B:HOH2020 4.3 50.1 1.0 CB B:PHE44 4.5 18.8 1.0 O B:HOH2023 4.5 56.9 1.0 N B:ASN38 4.5 26.1 1.0 CB B:ASN38 4.6 26.9 1.0 N B:ALA37 4.6 26.5 1.0 N B:SER45 4.7 23.5 1.0 C B:ALA37 4.8 27.9 1.0 CA B:SER45 4.9 23.5 1.0 O B:HOH2019 4.9 25.6 1.0 CA B:ASN38 4.9 32.6 1.0

M.Gorgel, J.J.Ulstrup, A.Boggild, N.C.Jones, S.V.Hoffmann, P.Nissen, T.Boesen. High-Resolution Structure of A Type IV Pilin From the Metal- Reducing Bacterium Shewanella Oneidensis. Bmc Struct.Biol. V. 15 4 2015.
ISSN: ISSN 1472-6807
PubMed: 25886849
DOI: 10.1186/S12900-015-0031-7