Sodium in PDB 4uir: Structure of Oleate Hydratase From Elizabethkingia Meningoseptica

All present enzymatic activity of Structure of Oleate Hydratase From Elizabethkingia Meningoseptica:
4.2.1.53;

The structure of Structure of Oleate Hydratase From Elizabethkingia Meningoseptica, PDB code: 4uir was solved by T.Pavkov-Keller, A.Hromic, M.Engleder, A.Emmerstorfer, G.Steinkellner, S.Schrempf, T.Wriessnegger, E.Leitner, G.A.Strohmeier, I.Kaluzna, D.Mink, M.Schuermann, S.Wallner, P.Macheroux, H.Pichler, K.Gruber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.846 / 2.75
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	84.174, 143.930, 155.785, 90.00, 90.00, 90.00
R / Rfree (%)	19.48 / 24.95

The binding sites of Sodium atom in the Structure of Oleate Hydratase From Elizabethkingia Meningoseptica (pdb code 4uir). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of Oleate Hydratase From Elizabethkingia Meningoseptica, PDB code: 4uir:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of Oleate Hydratase From Elizabethkingia Meningoseptica


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Oleate Hydratase From Elizabethkingia Meningoseptica within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1648 b:35.3 occ:1.00 O A:ASP250 2.7 24.0 1.0 OD1 A:ASN253 2.8 23.7 1.0 O A:HOH2125 3.1 20.6 1.0 O A:HOH2218 3.6 47.2 1.0 CG A:ASN253 3.6 23.5 1.0 ND2 A:ASN253 3.7 22.9 1.0 OD2 A:ASP254 3.8 20.0 1.0 O A:HOH2124 3.8 28.4 1.0 C A:ASP250 3.9 22.7 1.0 CG A:ASP254 4.2 20.2 1.0 OD1 A:ASP254 4.3 22.1 1.0 O B:ASN34 4.4 25.6 1.0 O A:HOH2123 4.6 20.6 1.0 CA A:GLY251 4.7 20.1 1.0 N A:GLY251 4.8 22.0 1.0 CA A:ASP250 4.9 21.4 1.0

Sodium binding site 2 out of 2 in the Structure of Oleate Hydratase From Elizabethkingia Meningoseptica


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Oleate Hydratase From Elizabethkingia Meningoseptica within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1643 b:28.0 occ:1.00 O B:ASP250 2.7 20.2 1.0 OD1 B:ASN253 2.7 23.2 1.0 CG B:ASN253 3.4 23.0 1.0 ND2 B:ASN253 3.6 25.8 1.0 OD2 B:ASP254 3.8 22.1 1.0 C B:ASP250 3.9 21.8 1.0 CG B:ASP254 4.3 21.6 1.0 OD1 B:ASP254 4.5 22.1 1.0 O A:ASN34 4.7 21.6 1.0 CA B:GLY251 4.7 20.0 1.0 CA B:ASP250 4.8 20.9 1.0 N B:GLY251 4.8 22.5 1.0 CB B:ASN253 4.8 21.7 1.0 CB B:ASP250 5.0 18.4 1.0

M.Engleder, T.Pavkov-Keller, A.Emmerstorfer, A.Hromic, S.Schrempf, G.Steinkellner, T.Wriessnegger, E.Leitner, G.A.Strohmeier, I.Kaluzna, D.Mink, M.Schurmann, S.Wallner, P.Macheroux, K.Gruber, H.Pichler. Structure-Based Mechanism of Oleate Hydratase From Elizabethkingia Meningoseptica. Chembiochem V. 16 1730 2015.
ISSN: ISSN 1439-4227
PubMed: 26077980
DOI: 10.1002/CBIC.201500269