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Sodium in PDB 4uhn: Characterization of A Novel Transaminase From Pseudomonas Sp. Strain Aac

Enzymatic activity of Characterization of A Novel Transaminase From Pseudomonas Sp. Strain Aac

All present enzymatic activity of Characterization of A Novel Transaminase From Pseudomonas Sp. Strain Aac:
2.6.1.18;

Protein crystallography data

The structure of Characterization of A Novel Transaminase From Pseudomonas Sp. Strain Aac, PDB code: 4uhn was solved by M.Wilding, T.S.Peat, J.Newman, C.Scott, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 89.34 / 2.21
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 62.912, 119.686, 134.257, 90.00, 90.00, 90.00
R / Rfree (%) 14.497 / 18.843

Other elements in 4uhn:

The structure of Characterization of A Novel Transaminase From Pseudomonas Sp. Strain Aac also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Characterization of A Novel Transaminase From Pseudomonas Sp. Strain Aac (pdb code 4uhn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Characterization of A Novel Transaminase From Pseudomonas Sp. Strain Aac, PDB code: 4uhn:

Sodium binding site 1 out of 1 in 4uhn

Go back to Sodium Binding Sites List in 4uhn
Sodium binding site 1 out of 1 in the Characterization of A Novel Transaminase From Pseudomonas Sp. Strain Aac


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Characterization of A Novel Transaminase From Pseudomonas Sp. Strain Aac within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1455

b:26.8
occ:1.00
 O A:ALA104 2.3 22.0 1.0
O A:HOH2037 2.3 30.6 1.0
OG1 A:THR107 2.4 23.2 1.0
O A:LEU111 2.5 18.9 1.0
O A:THR107 2.5 26.0 1.0
C A:THR107 3.0 24.5 1.0
O A:PRO108 3.0 31.3 1.0
C A:ALA104 3.3 21.9 1.0
CB A:THR107 3.3 23.3 1.0
C A:LEU111 3.5 19.9 1.0
CA A:THR107 3.5 23.6 1.0
CA A:ALA104 3.7 21.9 1.0
N A:THR107 3.7 24.5 1.0
N A:PRO108 3.7 25.5 1.0
C A:PRO108 3.8 29.9 1.0
OD1 A:ASP112 3.8 37.3 1.0
CB A:LEU111 3.9 20.0 1.0
CA A:LEU111 4.1 21.1 1.0
N A:LEU111 4.1 22.3 1.0
CA A:PRO108 4.1 28.5 1.0
O A:GLY109 4.4 29.8 1.0
CB A:ALA104 4.4 21.1 1.0
O A:ILE103 4.5 18.6 1.0
N A:GLN105 4.5 24.1 1.0
N A:ASP112 4.5 21.0 1.0
CG2 A:THR107 4.7 24.6 1.0
N A:GLY109 4.7 33.8 1.0
CA A:ASP112 4.7 23.9 1.0
CD A:PRO108 4.9 25.9 1.0
C A:GLN105 4.9 26.7 1.0
N A:ALA104 4.9 20.2 1.0
CG A:ASP112 4.9 37.4 1.0
C A:MET106 4.9 25.9 1.0
CA A:GLN105 4.9 28.0 1.0
C A:GLY109 5.0 27.9 1.0

Reference:

M.Wilding, T.S.Peat, J.Newman, C.Scott. A Beta-Alanine Catabolism Pathway Containing A Highly Promiscuous Omega-Transaminase in the 12-Aminododecanate- Degrading Pseudomonas Sp. Strain Aac. Appl.Environ.Microbiol. V. 82 3846 2016.
ISSN: ISSN 0099-2240
PubMed: 27107110
DOI: 10.1128/AEM.00665-16
Page generated: Tue Dec 15 08:31:08 2020

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