Sodium in PDB 4tm6: Crystal Structure of Eutl From Clostridium Perfringens at 298K

The structure of Crystal Structure of Eutl From Clostridium Perfringens at 298K, PDB code: 4tm6 was solved by M.C.Thompson, D.Cascio, T.O.Yeates, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	72.87 / 1.90
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	88.890, 88.890, 254.530, 90.00, 90.00, 90.00
R / Rfree (%)	13.7 / 15.9

The binding sites of Sodium atom in the Crystal Structure of Eutl From Clostridium Perfringens at 298K (pdb code 4tm6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Eutl From Clostridium Perfringens at 298K, PDB code: 4tm6:

Sodium binding site 1 out of 1 in the Crystal Structure of Eutl From Clostridium Perfringens at 298K


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Eutl From Clostridium Perfringens at 298K within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:15.2 occ:1.00 O B:HOH369 2.2 49.3 1.0 OD1 C:ASN74 2.2 29.3 1.0 OD1 A:ASN74 2.2 28.1 1.0 O A:HOH442 2.3 46.4 1.0 OD1 B:ASN74 2.3 27.2 1.0 O C:HOH353 2.3 43.1 1.0 CG C:ASN74 3.4 26.1 1.0 CG A:ASN74 3.4 27.4 1.0 CG B:ASN74 3.4 25.4 1.0 CB A:ASN74 4.2 22.9 1.0 CB C:ASN74 4.2 23.9 1.0 CB B:ASN74 4.2 24.9 1.0 ND2 C:ASN74 4.4 26.0 1.0 ND2 A:ASN74 4.4 27.0 1.0 ND2 B:ASN74 4.4 22.9 1.0 CA A:ASN74 4.5 24.0 1.0 CA C:ASN74 4.5 25.2 1.0 CA B:ASN74 4.5 25.6 1.0 O C:GLY73 4.9 31.9 1.0 O A:GLY73 4.9 29.2 1.0 O B:GLY73 5.0 30.8 1.0

M.C.Thompson, D.Cascio, D.J.Leibly, T.O.Yeates. An Allosteric Model For Control of Pore Opening By Substrate Binding in the Eutl Microcompartment Shell Protein. Protein Sci. 2015.
ISSN: ESSN 1469-896X
PubMed: 25752492
DOI: 10.1002/PRO.2672