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Sodium in PDB 4rw1: Hen Egg-White Lysozyme Structure From A Spent-Beam Experiment at Lcls: Original Beam

Enzymatic activity of Hen Egg-White Lysozyme Structure From A Spent-Beam Experiment at Lcls: Original Beam

All present enzymatic activity of Hen Egg-White Lysozyme Structure From A Spent-Beam Experiment at Lcls: Original Beam:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg-White Lysozyme Structure From A Spent-Beam Experiment at Lcls: Original Beam, PDB code: 4rw1 was solved by S.Boutet, L.Foucar, S.Botha, R.B.Doak, J.E.Koglin, M.Messerschmidt, K.Nass, I.Schlichting, R.Shoeman, G.J.Williams, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.05 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.240, 79.240, 38.230, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 25.6

Other elements in 4rw1:

The structure of Hen Egg-White Lysozyme Structure From A Spent-Beam Experiment at Lcls: Original Beam also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Hen Egg-White Lysozyme Structure From A Spent-Beam Experiment at Lcls: Original Beam (pdb code 4rw1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hen Egg-White Lysozyme Structure From A Spent-Beam Experiment at Lcls: Original Beam, PDB code: 4rw1:

Sodium binding site 1 out of 1 in 4rw1

Go back to Sodium Binding Sites List in 4rw1
Sodium binding site 1 out of 1 in the Hen Egg-White Lysozyme Structure From A Spent-Beam Experiment at Lcls: Original Beam


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hen Egg-White Lysozyme Structure From A Spent-Beam Experiment at Lcls: Original Beam within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:36.0
occ:1.00
 O A:SER60 2.3 28.2 1.0
O A:CYS64 2.4 25.2 1.0
O A:HOH368 2.5 38.3 1.0
OG A:SER72 2.5 36.5 1.0
O A:ARG73 2.6 36.0 1.0
O A:HOH302 2.7 28.2 1.0
CB A:SER72 3.3 37.1 1.0
C A:CYS64 3.4 25.7 1.0
C A:SER60 3.5 28.1 1.0
C A:ARG73 3.6 35.6 1.0
CA A:ASN65 4.0 26.5 1.0
N A:ARG73 4.0 36.5 1.0
C A:SER72 4.0 37.0 1.0
N A:ASN65 4.1 25.9 1.0
CA A:SER60 4.2 27.5 1.0
CA A:SER72 4.3 36.9 1.0
N A:ASN74 4.4 34.3 1.0
N A:CYS64 4.4 25.9 1.0
CA A:ARG73 4.4 36.4 1.0
CB A:SER60 4.4 27.3 1.0
O A:ARG61 4.4 29.8 1.0
O A:SER72 4.5 36.8 1.0
C A:ARG61 4.5 29.7 1.0
CA A:CYS64 4.5 25.5 1.0
CA A:ASN74 4.5 33.3 1.0
N A:ARG61 4.6 28.8 1.0
OD1 A:ASN65 4.7 32.7 1.0
CB A:ASN74 4.8 33.1 1.0
CB A:THR69 4.8 32.2 1.0
N A:TRP62 4.8 29.5 1.0
CB A:ASN65 4.8 27.0 1.0
CA A:ARG61 4.8 29.9 1.0
O A:HOH314 4.9 32.1 1.0
N A:ASP66 4.9 26.2 1.0
O A:THR69 4.9 33.5 1.0
N A:TRP63 5.0 27.8 1.0

Reference:

S.Boutet, L.Foucar, T.R.Barends, S.Botha, R.B.Doak, J.E.Koglin, M.Messerschmidt, K.Nass, I.Schlichting, M.M.Seibert, R.L.Shoeman, G.J.Williams. Characterization and Use of the Spent Beam For Serial Operation of Lcls. J.Synchrotron Radiat. V. 22 634 2015.
ISSN: ISSN 0909-0495
PubMed: 25931079
DOI: 10.1107/S1600577515004002
Page generated: Mon Oct 7 18:22:00 2024

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