Sodium in PDB 4rw0: Crystal Structure of A Member of the Lipolytic Protein G-D-S-L Family From Veillonella Parvula Dsm 2008

The structure of Crystal Structure of A Member of the Lipolytic Protein G-D-S-L Family From Veillonella Parvula Dsm 2008, PDB code: 4rw0 was solved by B.Nocek, C.Hatzos-Skintges, S.Clancy, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.00 / 2.00
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	121.650, 121.650, 84.173, 90.00, 90.00, 120.00
R / Rfree (%)	15.7 / 18.6

The binding sites of Sodium atom in the Crystal Structure of A Member of the Lipolytic Protein G-D-S-L Family From Veillonella Parvula Dsm 2008 (pdb code 4rw0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Member of the Lipolytic Protein G-D-S-L Family From Veillonella Parvula Dsm 2008, PDB code: 4rw0:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Member of the Lipolytic Protein G-D-S-L Family From Veillonella Parvula Dsm 2008


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Member of the Lipolytic Protein G-D-S-L Family From Veillonella Parvula Dsm 2008 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:19.9 occ:1.00 O A:ILE30 2.3 25.1 1.0 O A:VAL33 2.3 26.1 1.0 O A:ASP27 2.4 20.9 1.0 O A:HOH707 3.4 50.4 1.0 OD1 A:ASP27 3.5 28.0 1.0 C A:ASP27 3.5 24.0 1.0 C A:ILE30 3.6 31.2 1.0 C A:VAL33 3.6 28.1 1.0 O A:GLU31 3.6 49.0 1.0 CG A:ASP27 3.7 26.7 1.0 O A:HOH776 3.7 49.9 1.0 ND2 A:ASN34 3.7 36.9 1.0 OD2 A:ASP27 3.8 31.1 1.0 CA A:ASP27 4.0 22.2 1.0 C A:GLU31 4.1 40.0 1.0 N A:VAL33 4.2 30.4 1.0 CA A:GLU31 4.3 42.9 1.0 N A:GLU31 4.4 35.1 1.0 N A:ASN34 4.4 26.4 1.0 CA A:ASN34 4.4 26.4 1.0 CB A:ASP27 4.5 22.4 1.0 CA A:VAL33 4.5 30.7 1.0 CA A:ILE30 4.6 27.1 1.0 N A:ILE30 4.6 25.0 1.0 N A:ALA28 4.7 22.9 1.0 CB A:ILE30 4.8 31.7 1.0 CG A:ASN34 4.8 37.6 1.0 N A:ASN32 4.9 35.2 1.0 O A:HOH686 5.0 45.0 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Member of the Lipolytic Protein G-D-S-L Family From Veillonella Parvula Dsm 2008


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Member of the Lipolytic Protein G-D-S-L Family From Veillonella Parvula Dsm 2008 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na302 b:28.0 occ:1.00 O B:ILE30 2.3 37.9 1.0 O B:VAL33 2.3 35.2 1.0 O B:ASP27 2.4 38.5 1.0 OD1 B:ASP27 3.1 40.9 1.0 C B:ASP27 3.5 36.4 1.0 C B:ILE30 3.5 33.0 1.0 C B:VAL33 3.6 34.6 1.0 CG B:ASP27 3.8 41.0 1.0 CA B:ASP27 3.9 35.5 1.0 OD1 B:ASN34 4.0 38.6 0.6 O B:GLU31 4.1 37.9 1.0 CA B:GLU31 4.1 35.5 1.0 C B:GLU31 4.3 35.3 1.0 N B:GLU31 4.3 38.9 1.0 N B:VAL33 4.4 42.0 1.0 N B:ASN34 4.5 33.2 1.0 OD2 B:ASP27 4.5 47.0 1.0 CB B:ASP27 4.5 35.6 1.0 CA B:ASN34 4.5 33.9 0.6 CA B:VAL33 4.5 35.1 1.0 CA B:ASN34 4.5 32.8 0.4 CA B:ILE30 4.6 33.7 1.0 N B:ILE30 4.6 32.9 1.0 N B:ALA28 4.7 31.9 1.0 CG B:ASN34 4.9 38.4 0.6 O B:CYS26 5.0 33.7 1.0

B.Nocek, C.Hatzos-Skintges, S.Clancy, A.Joachimiak. Crystal Structure of A Member of the Lipolytic Protein G-D-S-L Family From Veillonella Parvula Dsm 2008 To Be Published.