Sodium in PDB 4rso: The Structure of the Neurotropic Aavrh.8 Viral Vector

The structure of The Structure of the Neurotropic Aavrh.8 Viral Vector, PDB code: 4rso was solved by S.Halder, K.Van Vliet, J.K.Smith, R.Mckenna, J.M.Wilson, M.Agbandje-Mckenna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 3.50
Space group	P 21 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	355.500, 358.900, 371.500, 90.00, 90.00, 90.00
R / Rfree (%)	21.7 / 21.9

The structure of The Structure of the Neurotropic Aavrh.8 Viral Vector also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the The Structure of the Neurotropic Aavrh.8 Viral Vector (pdb code 4rso). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Structure of the Neurotropic Aavrh.8 Viral Vector, PDB code: 4rso:

Sodium binding site 1 out of 1 in the The Structure of the Neurotropic Aavrh.8 Viral Vector


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Structure of the Neurotropic Aavrh.8 Viral Vector within 5.0Å range: probe atom residue distance (Å) B Occ A:Na802 b:44.4 occ:1.00 OD1 A:ASN253 3.5 56.0 1.0 OG A:SER278 3.7 36.6 1.0 CD A:LYS258 4.1 48.6 1.0 CG A:ASN253 4.3 54.6 1.0 ND2 A:ASN253 4.3 54.9 1.0 CB A:SER278 4.4 35.6 1.0 CG2 A:ILE260 4.6 49.7 1.0 NZ A:LYS258 4.9 50.8 1.0 CB A:LYS258 4.9 45.7 1.0

S.Halder, K.Van Vliet, J.K.Smith, T.T.Duong, R.Mckenna, J.M.Wilson, M.Agbandje-Mckenna. Structure of Neurotropic Adeno-Associated Virus Aavrh.8. J.Struct.Biol. V. 192 21 2015.
ISSN: ISSN 1047-8477
PubMed: 26334681
DOI: 10.1016/J.JSB.2015.08.017