Sodium in PDB 4rqa: Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group)

Enzymatic activity of Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group)

All present enzymatic activity of Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group):
2.4.2.8;

Protein crystallography data

The structure of Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group), PDB code: 4rqa was solved by A.Ghosh, S.C.Almo, New York Structural Genomics Research Consortium(Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	20.00 / 1.48
*Space group*	I 2 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	66.158, 71.919, 103.036, 90.00, 90.00, 90.00
*R / R_free (%)*	15 / 19.4

Other elements in 4rqa:

The structure of Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group) also contains other interesting chemical elements:

Chlorine

(Cl)

5 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group) (pdb code 4rqa). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group), PDB code: 4rqa:

Sodium binding site 1 out of 1 in 4rqa

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Sodium Binding Sites List in 4rqa

Sodium binding site 1 out of 1 in the Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group)

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na203 b:22.9 occ:0.50	OD1	A:ASP56	2.3	20.7	1.0
	CL	A:CL207	2.4	25.6	0.5
	OG	A:SER55	2.4	9.1	0.2
	CG	A:ASP56	3.2	22.9	1.0
	CB	A:SER55	3.4	13.6	0.2
	CB	A:SER55	3.6	21.0	0.8
	OD2	A:ASP56	3.7	22.2	1.0
	NZ	A:LYS59	3.7	23.1	1.0
	N	A:ASP56	3.8	18.8	1.0
	C	A:SER55	4.0	18.7	1.0
	O	A:MSE52	4.1	20.9	1.0
	CA	A:ASP56	4.2	18.0	1.0
	CB	A:ASP56	4.2	18.7	1.0
	CE	A:LYS59	4.3	23.9	1.0
	CA	A:SER55	4.4	17.0	0.2
	CA	A:SER55	4.4	17.3	0.8
	O	A:SER55	4.5	21.2	1.0
	CE	A:MSE52	4.7	9.7	0.4
	OG	A:SER55	4.7	25.4	0.8
	O2	A:GOL201	4.8	31.7	0.5

Reference:

A.Ghosh, A.Ahmed, R.Bhoshle, R.Seidel, M.Stead, R.Toro, V.L.Schramm, S.C.Almo, New York Structural Genomics Research Consortium (Nysgrc). Crystal Structure of A Hypoxanthine Phosphoribosyltransferase (Target Id Nysgrc-029686) From Staphylococcus Aureus (Orthorhombic Space Group) To Be Published.

Page generated: Mon Oct 7 18:20:25 2024

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