Atomistry » Sodium » PDB 4n01-4nji » 4nhs
Atomistry »
  Sodium »
    PDB 4n01-4nji »
      4nhs »

Sodium in PDB 4nhs: X-Ray Structure of the Complex Between Hen Egg White Lysozyme and Pentachlorocarbonyliridate(III) (9 Days)

Enzymatic activity of X-Ray Structure of the Complex Between Hen Egg White Lysozyme and Pentachlorocarbonyliridate(III) (9 Days)

All present enzymatic activity of X-Ray Structure of the Complex Between Hen Egg White Lysozyme and Pentachlorocarbonyliridate(III) (9 Days):
3.2.1.17;

Protein crystallography data

The structure of X-Ray Structure of the Complex Between Hen Egg White Lysozyme and Pentachlorocarbonyliridate(III) (9 Days), PDB code: 4nhs was solved by A.A.Petruk, D.E.Bikiel, A.Vergara, A.Merlino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.06 / 1.99
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.681, 77.681, 37.041, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 29.9

Other elements in 4nhs:

The structure of X-Ray Structure of the Complex Between Hen Egg White Lysozyme and Pentachlorocarbonyliridate(III) (9 Days) also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms
Iridium (Ir) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Structure of the Complex Between Hen Egg White Lysozyme and Pentachlorocarbonyliridate(III) (9 Days) (pdb code 4nhs). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of the Complex Between Hen Egg White Lysozyme and Pentachlorocarbonyliridate(III) (9 Days), PDB code: 4nhs:

Sodium binding site 1 out of 1 in 4nhs

Go back to Sodium Binding Sites List in 4nhs
Sodium binding site 1 out of 1 in the X-Ray Structure of the Complex Between Hen Egg White Lysozyme and Pentachlorocarbonyliridate(III) (9 Days)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of the Complex Between Hen Egg White Lysozyme and Pentachlorocarbonyliridate(III) (9 Days) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1004

b:32.8
occ:1.00
 O A:SER60 2.2 26.1 1.0
O A:ARG73 2.4 39.4 1.0
OG A:SER72 2.7 35.6 1.0
O A:CYS64 2.7 27.5 1.0
O A:HOH1109 2.9 19.6 1.0
CB A:SER72 3.2 37.7 1.0
C A:ARG73 3.3 39.1 1.0
C A:SER60 3.4 28.2 1.0
C A:CYS64 3.6 26.7 1.0
C A:SER72 3.7 37.9 1.0
N A:ARG73 3.7 38.3 1.0
O A:SER72 4.1 38.0 1.0
CA A:SER60 4.1 27.4 1.0
CA A:SER72 4.1 38.3 1.0
CA A:ARG73 4.1 38.8 1.0
CA A:ASN65 4.2 28.4 1.0
N A:ASN74 4.2 38.1 1.0
C A:ARG61 4.2 32.9 1.0
N A:CYS64 4.3 24.5 1.0
O A:ARG61 4.3 32.1 1.0
N A:ASN65 4.3 28.8 1.0
CA A:ASN74 4.3 37.7 1.0
CB A:SER60 4.4 26.8 1.0
N A:ARG61 4.4 29.8 1.0
N A:TRP62 4.4 34.3 1.0
CA A:ARG61 4.5 33.2 1.0
CA A:CYS64 4.6 27.2 1.0
CB A:ASN74 4.6 36.6 1.0
OD1 A:ASN65 4.6 37.7 1.0
C A:TRP62 4.7 32.1 1.0
O A:TRP62 4.8 31.8 1.0
CA A:TRP62 4.9 34.5 1.0
N A:TRP63 4.9 29.4 1.0
CB A:ASN65 4.9 30.5 1.0
CL A:CL1003 5.0 38.2 1.0
CB A:THR69 5.0 30.4 1.0

Reference:

A.A.Petruk, A.Vergara, D.Marasco, D.E.Bikiel, F.Doctorovich, D.A.Estrin, A.Merlino. Interaction Between Proteins and Ir Based Co Releasing Molecules: Mechanism of Adduct Formation and Co Release To Be Published.
Page generated: Mon Oct 7 17:12:09 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy